Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120656.seq
         (688 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113600-1|AAM29605.1|  121|Drosophila melanogaster RH52355p pro...    29   7.9  
AY071678-1|AAL49300.1|  121|Drosophila melanogaster RH06571p pro...    29   7.9  
AE013599-3439|AAF46882.1|  121|Drosophila melanogaster CG4250-PA...    29   7.9  

>AY113600-1|AAM29605.1|  121|Drosophila melanogaster RH52355p
           protein.
          Length = 121

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 482 IVCCCVSFITTSCLFVSSTCS 544
           I CCC+ + T SC     TC+
Sbjct: 90  ICCCCIPYCTDSCQSAKHTCT 110


>AY071678-1|AAL49300.1|  121|Drosophila melanogaster RH06571p
           protein.
          Length = 121

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 482 IVCCCVSFITTSCLFVSSTCS 544
           I CCC+ + T SC     TC+
Sbjct: 90  ICCCCIPYCTDSCQSAKHTCT 110


>AE013599-3439|AAF46882.1|  121|Drosophila melanogaster CG4250-PA
           protein.
          Length = 121

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 482 IVCCCVSFITTSCLFVSSTCS 544
           I CCC+ + T SC     TC+
Sbjct: 90  ICCCCIPYCTDSCQSAKHTCT 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,161,081
Number of Sequences: 53049
Number of extensions: 361003
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)