Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120656.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    33   0.19 
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    29   2.4  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    29   2.4  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    29   3.1  

>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +1

Query: 589 SVIRIYNVFICXNVTLINVTAXGILXXXGYNYY 687
           SVIR  NVF   NVT I V   GI+   GY  Y
Sbjct: 196 SVIRWRNVFCTFNVTFIMVVQYGIMIFCGYQLY 228


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 490 LLRQFYHDFLFVCFIDLFVIMINYKFFVGVNIXSVIRIYNVFICXNVTLINVT 648
           LL   +  FL VC I    + INY    G  +     I+NV IC  ++L++V+
Sbjct: 198 LLITTFGGFL-VCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLSVS 249


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 141  RFTSRILRVKHDQEMMSFIIKIKIDVIC 224
            RF S+ L VKHDQE  SF+     D  C
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGTDASC 2066


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 141  RFTSRILRVKHDQEMMSFIIKIKIDVIC 224
            RF S+ L VKHDQE  SF+     D  C
Sbjct: 2039 RFASKALCVKHDQEHASFLDSNGTDASC 2066


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 493 LRQFYHDFLFVCFIDLFVIMINYKFFVGVNIXSVIRIYNVFIC 621
           +R F+       F+D   +++NYK+F+        R Y +++C
Sbjct: 199 IRHFFEQHYKHLFLDSRHLLLNYKYFLRYQEKQEERAYGLYVC 241


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = +3

Query: 63  HDRKVMSFVFQNLI*EMMSLVFQN*TRFTSRILRVKHDQEMMSFII-----KIKIDVICF 227
           H +KV  F  + LI E++SLV +     + RI  +  D+E  S ++       K+DV   
Sbjct: 158 HGQKVNEFSHKQLIEELVSLVDEGTELGSGRIRLIARDREARSGVVILETQSTKVDVKLV 217

Query: 228 FKTELALRVNSTCKT*SRN 284
             T L L  +S+    ++N
Sbjct: 218 HNTGLKLLHHSSALLTNKN 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,138,212
Number of Sequences: 27780
Number of extensions: 213454
Number of successful extensions: 293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)