Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120655.seq
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 31 0.16
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 1.9
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 2.6
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.6
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 4.5
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 4.5
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 5.9
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 26 5.9
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 54 CRPQMTQVQTDTLLDAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 185
C P + Q DT+L+A+R ++E+ T L T +D++RS+ F
Sbjct: 1132 CSPSIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 60 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 218
PQ+T++ + D VR T+D ++++I +S+F +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 329 GTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTM 436
GT I E N L ID PLSR Y+NA T+
Sbjct: 1198 GTMIAAETFDELENNLALAIDRLPLSRNYFNAGLTL 1233
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 490 LNVE-LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 359
LNV L +GH FHG V GRI++ T Y E+ V ++
Sbjct: 268 LNVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 65 NDAGSNGHAVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 205
N+ G++G +G+ D+F+ + L D ++ ++ F++SD I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 332 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFNIEDYNN 502
TE+ C+DS++ R L + + +PLS + +NT E YA N + +N
Sbjct: 378 TELFQCEDSKYYVRHLVNEEVFPLSDCGFGPSNTS-DGMCELYAYLNSPVRVNGTSN 433
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 332 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 433
TE+ FC DS++ R L + YPL Y + T
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 643 LCSCSFYLINIFYALHSTIELPNICLTRLGRLNFCCCVS*YFPS 512
L +CS I++ Y L+ LP I + LNF ++ YF S
Sbjct: 120 LSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFAS 163
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -2
Query: 378 SSLFKNSESS----QNGISV-PLLMYCCGCNICIFSPRSINN 268
SS F+ ES+ Q I+V PLL+ C CN FS RS+ +
Sbjct: 1230 SSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKS 1271
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 514 SPKYVIVILNVELAIGHGIVFHGRVKHGIGRIVIHPT 404
+P YV+ + + I I HG +GR IHP+
Sbjct: 184 TPSYVVFDVAKPVPIDVNIYDHGNNNEFVGRTYIHPS 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,976
Number of Sequences: 5004
Number of extensions: 57248
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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