Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120655.seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)                    30   1.5  
SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)                    29   2.7  
SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)                  28   6.2  
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)                    28   6.2  
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   28   8.3  
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_45491| Best HMM Match : Agenet (HMM E-Value=1.4)                    28   8.3  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   8.3  
SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)         28   8.3  
SB_51210| Best HMM Match : rve (HMM E-Value=2.2e-13)                   28   8.3  
SB_11376| Best HMM Match : Agenet (HMM E-Value=0.69)                   28   8.3  

>SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 209 RVFHNRTVETTCKRRPHNID-GRQVDCGRRHLQQRSHG 99
           RV+   T+++T   RPH +D        R + QQR HG
Sbjct: 347 RVYQQETIDSTVNTRPHGMDKSLPARDNRLYRQQRPHG 384


>SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)
          Length = 218

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 359 EFLNRLLKHIDPYPLSRMYY--NAANTMFYTTMENYAVSNCKFNI 487
           E L+ L KH+    L+   +  N+  T FYT + NY   NC + +
Sbjct: 117 EELSNLRKHLVSIKLTEETFKENSETTKFYTGLPNYNTFNCVYKL 161


>SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 179 LFQQSDYEIRENSAVTKRGFTARQTPTLEELLIERGEKIQMLQPQQYINSGTEIPFCD 352
           L ++ DY+I  N+A  +      +   LEE + E+ E+I+ L        G ++  CD
Sbjct: 176 LEREKDYDISINNARRREKSLMTKVRRLEETMREQDEEIKYLSRPNLNEIGQDVETCD 233


>SB_59625| Best HMM Match : P19Arf_N (HMM E-Value=5.1)
          Length = 1463

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 191  TVETT--CKRRPHNIDGR-QVDCGRRHLQQRSHGVQQRVRLNLRHLR 60
            TV T+  CKRR  N DG+ +    RRHL  R+  +++   L  R L+
Sbjct: 996  TVRTSKFCKRRLRNADGKDRSTLQRRHLHNRTTALRRLCLLKRRLLK 1042


>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
          Length = 553

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 466 HGIVFHGRVKHGIGR 422
           HG+VFHG  +HG GR
Sbjct: 250 HGVVFHGARQHGRGR 264


>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 179 LFQQSDYEIRENSAVTKRGF-TARQTPTLEELLIERGEKIQ 298
           L +Q   EIR+NSA+T+ G    ++   L+E L+ R +++Q
Sbjct: 159 LNRQLQKEIRDNSALTQEGMKIVKEHNELQEKLMSRKDELQ 199


>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = +2

Query: 287 EKIQMLQPQQYINS------GTEIPFCDDSEFLNRLLKHIDPYPL 403
           EK+++ +P  +I+S      G+++P C D + LN+ LK    YP+
Sbjct: 130 EKMEVTEPTDWISSQVVVRKGSKLPLCIDPKDLNKALKR-SHYPM 173


>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 254 PTLEELLIERGEKIQMLQPQQY-INSGTEIP 343
           PTLEELL+ R EK+   +  +  INS  + P
Sbjct: 485 PTLEELLVSRREKVHQTERLRLTINSSPQSP 515


>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 450 WKTMPCPIASSTLRITITYLGDGKY 524
           W+ + C +   +  I +TY+GDGKY
Sbjct: 431 WELV-CSLLGESYPINVTYIGDGKY 454


>SB_45491| Best HMM Match : Agenet (HMM E-Value=1.4)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 281 RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 412
           R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 137 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 180


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 511  VMENIRKHSNKNLNDQDELNIYLGVQSSNAKRK 609
            ++E+ ++ S  ++ D DE      +QSSN KRK
Sbjct: 2488 MVESFKRRSTTSMGDLDENEYVAELQSSNLKRK 2520


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 333 VPLLMYCCGCNICIFSPRSINNSSRVGVC 247
           V LLM CC C I   S R +  S RV  C
Sbjct: 116 VVLLMPCCSCRIACCSCRVVCYSCRVVFC 144


>SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 125 FDHSRLDDRRYYAVVVCTLFQQSDYEIRENSAVTKRGFTARQTPTLEELLIERGEKIQML 304
           FD+ R+D RR++ +V        D++IR N    +     R+   +    +  GE  + L
Sbjct: 217 FDYFRMDKRRFHFLV-----DAVDHKIRRNDTSMRSSIKPRERMAVTLRYLATGESFKSL 271

Query: 305 QPQ 313
           Q Q
Sbjct: 272 QFQ 274


>SB_51460| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-33)
          Length = 1584

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 281  RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 412
            R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 1493 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 1536


>SB_51210| Best HMM Match : rve (HMM E-Value=2.2e-13)
          Length = 331

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 281 RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 412
           R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 240 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 283


>SB_11376| Best HMM Match : Agenet (HMM E-Value=0.69)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 281 RGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPYPLSRM 412
           R E +Q LQP+Q  N  TE     D   L    +H + +PL R+
Sbjct: 137 RREYLQNLQPRQKWNGATESLRAGDIILLRDETEHRNDWPLGRV 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,629,846
Number of Sequences: 59808
Number of extensions: 460040
Number of successful extensions: 1407
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)