Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120655.seq
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-6|AAB53828.1| 873|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical pr... 28 5.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 7.3
AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical ... 28 7.3
AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical ... 28 7.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 7.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 7.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 7.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 7.3
AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm rece... 27 9.6
>U00048-6|AAB53828.1| 873|Caenorhabditis elegans Hypothetical
protein C05D11.8 protein.
Length = 873
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 137 DCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEQR 12
D +HL GVQ R+ + + S + ++RGFE + R
Sbjct: 751 DSSEKHLLTILQGVQTRIDVMAEGIESFEIWIERGFETLKAR 792
>Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical
protein R03G8.1 protein.
Length = 663
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 506 ICYCNPQC*TCNWTRHSF 453
ICYC Q C+WTR +F
Sbjct: 641 ICYCKEQPKQCSWTRLNF 658
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 212 FRVFHNRT-VETTCKRRPHNIDGRQVD 135
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical
protein B0205.1b protein.
Length = 720
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 66 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 206
+T +++DTL+D +R + E+ + T D + D++ + CF K+
Sbjct: 604 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 651
>AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical
protein B0205.1a protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 66 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 206
+T +++DTL+D +R + E+ + T D + D++ + CF K+
Sbjct: 629 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 676
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 212 FRVFHNRT-VETTCKRRPHNIDGRQVD 135
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 212 FRVFHNRT-VETTCKRRPHNIDGRQVD 135
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 212 FRVFHNRT-VETTCKRRPHNIDGRQVD 135
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 212 FRVFHNRT-VETTCKRRPHNIDGRQVD 135
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF016685-9|AAG24149.1| 330|Caenorhabditis elegans Seven tm
receptor protein 87 protein.
Length = 330
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 563 SSWSFKFLLLCFLIFSIT*ICYCNPQC 483
+ W F+L LIFS++ +C+C C
Sbjct: 201 ADWITMFILCGGLIFSVSTMCFCGYSC 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,891,855
Number of Sequences: 27780
Number of extensions: 342383
Number of successful extensions: 1080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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