Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120655.seq
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.4  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 681 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 574
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 380 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIED 493
           KH++   L R YY  +N +  TT+++   V++ +F I D
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITD 420


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 681 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 574
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 380 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIED 493
           KH++   L R YY  +N +  TT+++   V++ +F I D
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITD 420


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 447 PWKTMPCPIASSTLRITITYLGDGKY*ETQQQ 542
           P +T P P +++ +  TIT+L D  +  T  Q
Sbjct: 293 PPETQPTPPSATLVGTTITHLRDPDHHSTDIQ 324


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 432 PCFTRPWKTMPCPIASSTL 488
           PCF  P  ++P P A   L
Sbjct: 469 PCFEEPLPSLPLPGADDDL 487


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 119 LQQRSHGVQQRVRLNLRHLRSARVVV 42
           +++ +   +    LNL+HLR+A +V+
Sbjct: 51  MREETEDAEDTQTLNLKHLRAAVLVL 76


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 322 QQRYRNSVLRRFRVFEQAAQTHRSVPA 402
           ++ YR+ +L  FR  + A+Q H+ + A
Sbjct: 5   KEHYRHILLFYFRKGKNASQAHKKLCA 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,594
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)