Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120655.seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29580.1 68414.m03617 hypothetical protein                          32   0.31 
At3g25100.1 68416.m03135 cell division control protein-related c...    30   1.7  
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    29   3.9  
At1g20080.1 68414.m02513 C2 domain-containing protein contains I...    28   5.1  
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04...    27   8.9  

>At1g29580.1 68414.m03617 hypothetical protein
          Length = 89

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = -3

Query: 284 RARSTILQEWAFVAL*SHVL*QHYFRVFHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRS 105
           ++ +T  Q+     L    L  H + +  N    T  + R  N D   VD  +++L++  
Sbjct: 5   QSHTTQQQQSVQTPLQHQTLASHLYPLVENLKDVTESRARDQNSDALYVDVQKQNLEESE 64

Query: 104 HGVQQRVRLNLRHLRSARVVVKR 36
             +QQR+ L   + +S   +VK+
Sbjct: 65  QLLQQRMELIEEYKKSVEEIVKK 87


>At3g25100.1 68416.m03135 cell division control protein-related
           contains weak similarity to cell division control
           protein 45 homolog (Suppressor of nda4 protein)
           (Swiss-Prot:O74113) [Schizosaccharomyces pombe]
          Length = 596

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 107 ISVGDAFDHSRLDDRRYYAVVV-CTLFQQSDYEIRENSAVTKRGFTARQTPTLEELLIER 283
           +S+ D F H RL D RY A V+       S   I + ++VT +  T  + P    +  E 
Sbjct: 248 VSLTDQFVHERLTDERYQAAVMELEQHINSSGNIDKITSVTLKDGTKVRAPDCSRISYEE 307

Query: 284 GEKIQMLQ 307
             ++ +L+
Sbjct: 308 EPRLMLLR 315


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 176 CKRRPHNIDGRQVDCGRRHLQQRSHGVQ 93
           C+   H IDGR V+C   +L  R H  Q
Sbjct: 67  CENPNHTIDGRTVNCKLAYLGARVHNYQ 94


>At1g20080.1 68414.m02513 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 535

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +2

Query: 236 FTARQTPTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDSEFLNRLLKHIDPY---PLS 406
           F +   P ++ L+    E I  + P+  I    + P  D  ++LN+L+ H+ PY    + 
Sbjct: 31  FQSTDDPEIKPLVELDSETIATMFPE--IPMWVKNPDFDRIDWLNKLIGHMWPYMDKAIC 88

Query: 407 RMYYNAANTMFYTTMENYAVSNCKFNI 487
           +M  + A  +    + NY + + +F +
Sbjct: 89  KMAKSIAKPIIAEQIPNYKIDSVEFEM 115


>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 
           contains Pfam PF04510 : Family of unknown function
           (DUF577)
          Length = 609

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 390 SMCLSSLFKNSESSQNGISVPLLMYCCGCNI-CI-FSPRSINNSSRVGVCR 244
           +M + +LFK  +S +   S  L  YC  CN+ C+      +  SS  G+ R
Sbjct: 24  AMIVDNLFKRKDSEEYKTSRALYDYCVSCNLGCLTLKLLKLYQSSSNGILR 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,500
Number of Sequences: 28952
Number of extensions: 297579
Number of successful extensions: 873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)