Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120654.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   1.5  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    25   7.9  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   7.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   7.9  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 355 NAPHRPCTTDLGTQAVAFLNRDRSS 281
           N PH+P   D G  ++ FL++ R+S
Sbjct: 472 NTPHKPLAADAGLDSLKFLDQIRTS 496


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 256 YINLTRIDSLSDHDLKMLQLVCRDRWYKGDVARLRRILQQKDVDDLVKFACNVMWERAYE 435
           YI +T      D +  +LQ V +D +  G +      +  +D+ ++ K AC   +E   E
Sbjct: 53  YITVTSDVEAWDVEELILQ-VLQDEFNVGSIEDDSPYILAQDLVNVWKAACEDNYEPIRE 111

Query: 436 NHYTLGQQL 462
            H  LG+QL
Sbjct: 112 IHERLGKQL 120


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 NGFDYTLPRFVKREVQVNADGFLRFDYN 190
           +G    L  F +R V VN DG  R+D+N
Sbjct: 63  DGITKRLKEF-ERTVTVNKDGIFRYDFN 89


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 544 VVGKTPRLKSIYNRSRPLARLSNDTC 621
           VV   P  KSI NR+  LA + N TC
Sbjct: 407 VVVTPPGSKSISNRALVLAAMGNGTC 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,446
Number of Sequences: 5004
Number of extensions: 60500
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)