Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120654.seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0100 - 755894-756662,757086-757598,758718-761050                 29   4.6  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    28   6.1  
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           28   8.1  

>01_01_0100 - 755894-756662,757086-757598,758718-761050
          Length = 1204

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +3

Query: 462 EHTNHNQVNSERFGFQHQPDTTAPVSVRGWEDATFEKYLQSITSISEVIKRHVFSKKYIC 641
           ++ NHN + +++   Q    TT  +  +G    TF  Y  ++  ISEV KR   S K   
Sbjct: 766 QNRNHNNIRTKKRFLQQSVQTTV-IHEQG---ITFIPYQNNVPYISEVRKRGGVSPKLDN 821

Query: 642 LEV 650
           LEV
Sbjct: 822 LEV 824


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 85  GFVRNLFKRVRLHATSFCKARSASERRWIS 174
           GF+    K+   HAT F K+ + ++ +WIS
Sbjct: 60  GFISKKGKKPSHHATRFVKSNAFADHKWIS 89


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +2

Query: 542 AWLGRRHV*KVFTIDHVH*RGYQTTRVFQKVHLSRSSSVILVGHCGI 682
           +WL  ++  +++T+D +  RG+Q  ++     +   S+V L+ HC +
Sbjct: 290 SWLATQN--RLWTVDRLEKRGWQNQKICPLCCIIDESAVHLLAHCRV 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,273,086
Number of Sequences: 37544
Number of extensions: 390551
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)