Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120654.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)           31   1.2  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_13776| Best HMM Match : Plasmid_killer (HMM E-Value=4)              29   3.6  
SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)       29   3.6  
SB_47030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)                     29   4.7  
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)                   29   4.7  
SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)
          Length = 252

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 298 NRDRSSYQFWLDLYSVDILGRGLRHVRETCKIKY 197
           N D S    W DL S +I+    RH+ ++CK+ +
Sbjct: 33  NGDESGSTVWNDLTSEEIMAARKRHIGKSCKVHF 66


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223  HDASHARGYRRYINLTRIDSLSDHD---LKMLQLVCRDRWYKG 342
            HD S+A G  RY+N  R D+ +D     LKM  L+  DRW KG
Sbjct: 1376 HDGSNA-GEWRYVN--RDDNPADDGSKGLKMDTLIRNDRWLKG 1415


>SB_13776| Best HMM Match : Plasmid_killer (HMM E-Value=4)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 HDASHARGYRRYINLTRIDSLSDHD---LKMLQLVCRDRWYKG 342
           HD S+A G  RY+N  R D+ +D     LKM  L+  DRW KG
Sbjct: 75  HDGSNA-GEWRYVN--RDDNPADDGSKGLKMDTLIRNDRWLKG 114


>SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)
          Length = 811

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 HDASHARGYRRYINLTRIDSLSDHD---LKMLQLVCRDRWYKG 342
           HD S+A G  RY+N  R D+ +D     LKM  L+  DRW KG
Sbjct: 286 HDGSNA-GEWRYVN--RDDNPADDGSKGLKMDTLIRNDRWLKG 325


>SB_47030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 223 HDASHARGYRRYINLTRIDSLSDHD---LKMLQLVCRDRWYKG 342
           HD S+A G  RY+N  R D+ +D     LKM  L+  DRW KG
Sbjct: 48  HDGSNA-GEWRYVN--RDDNPADDGSKGLKMDTLIRNDRWLKG 87


>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +2

Query: 23  TRLEHTTQFLPQACKLEDEVLVLYAIYLNGFDYTLPRFVKREVQVNADGFLRF-DYNIKI 199
           T+ + T + +    +LED+ L +  IY    D       +++  +N D +L   +YNI  
Sbjct: 157 TKRDTTGRVINITIELEDQTLCITNIYAPRTDTE-----RKQFYLNLDPYLAIKNYNIIE 211

Query: 200 FDFARFTDMTQA 235
            DF   TD+TQA
Sbjct: 212 GDFNCITDITQA 223


>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 791

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 552 EDATFEKYLQSITSISEVIKRHVFSKKYICLEVAASYWSDTVES 683
           +D+   KYL+ I  + ++I + V    ++  E+AA+   +T +S
Sbjct: 623 KDSLIRKYLEEIQQLKKIIAKEVEMPSHLASEIAANPGPETRDS 666


>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
          Length = 351

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 415 LRYTQI*RDHQRLSVAKFSANAPHRPCTTDL--GTQAVAFLNRDRSSYQFWLDLYSVDIL 242
           L+   I R H++ ++ ++   +  +PC  ++    +    +  D  +  +W  LY+   L
Sbjct: 280 LKENDIFRPHRKYALKEYEKRSHRKPCINEIWGERRKTNLIMFDEDTELYWFTLYASKEL 339

Query: 241 GRGLR 227
            RG R
Sbjct: 340 SRGSR 344


>SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 691 CGXDSTVSDQYDAATSRQMYFLENTCRLITSLMDVIDCKYFSNVASSQPRTD 536
           C   ST    +   T R   F ++ C + TSL  +     FSN++S     D
Sbjct: 156 CEEASTEQKNFQKGTKRTELFSDSACSIGTSLQHIDSRNGFSNLSSRLSELD 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,053,738
Number of Sequences: 59808
Number of extensions: 478072
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)