Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120654.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U10402-8|AAA19070.2| 1024|Caenorhabditis elegans Hypothetical
           protein C34E10.8 protein.
          Length = 1024

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 343 DVARLRRILQQKDVDDLVKFACNVMWERAYENHYTLG 453
           D+  ++  L QKD+DDL++F   ++  +A + H  LG
Sbjct: 146 DILNIKMDLVQKDIDDLIEFK-ELVTSQAQKEHELLG 181


>U50300-7|AAC48106.1|  645|Caenorhabditis elegans Hypothetical
           protein R03H4.5 protein.
          Length = 645

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 558 ATFEKYLQSITSI--SEVIKRHVFSKKYICLEVAASY 662
           AT + YL  I SI  + ++  H+F K+Y+ LE+ A +
Sbjct: 310 ATVKSYLFCILSIFIASIVLHHLFEKQYLKLEMRAVF 346


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 615  HVFSKKYICLEVAASYWSDTVES 683
            HVF+KKY C  V+AS  ++T E+
Sbjct: 1531 HVFTKKYQCCSVSASRDNNTDEA 1553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,240
Number of Sequences: 27780
Number of extensions: 348552
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)