Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120654.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11040.1 68417.m01795 protein phosphatase 2C, putative / PP2C...    32   0.41 
At3g55500.1 68416.m06163 expansin, putative (EXP16) similar to e...    28   5.1  
At2g28950.1 68415.m03521 expansin, putative (EXP6) similar to ex...    28   5.1  
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    28   6.8  

>At4g11040.1 68417.m01795 protein phosphatase 2C, putative / PP2C,
           putative phosphoprotein phosphatase (EC 3.1.3.16) 2C -
           Arabidopsis thaliana, PIR2:S55457
          Length = 295

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 283 LSDHDLKMLQLVCRDRWYKGDVARLRRILQQKDVDDLVKFACNVMWE 423
           L  HD   L L C    +K  V ++ +I ++K +DD +  AC+ +W+
Sbjct: 187 LYSHDGVALPL-CHIHHHKDGVEQILKIHKRKKIDDFIVLACDGLWD 232


>At3g55500.1 68416.m06163 expansin, putative (EXP16) similar to
           expansin GI:2828241 from [Brassica napus];
           alpha-expansin gene family, PMID:11641069
          Length = 260

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 418 WERAYENHYTL-GQQLSIRITTKLIQSGLDFNISPTRQRPCRCVVGKTPRL 567
           W + ++++  L GQ LS R+T+   ++   +NI+P+  +  +  VGK  R+
Sbjct: 210 WGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFRV 260


>At2g28950.1 68415.m03521 expansin, putative (EXP6) similar to
           expansin GI:2828241 from [Brassica napus]; contains Pfam
           profile PF01357: Pollen allergen
          Length = 257

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 418 WERAYENHYTL-GQQLSIRITTKLIQSGLDFNISPTRQRPCRCVVGKTPRL 567
           W + ++++  L GQ LS R+T+   +S   +NI+P   +  +  +GK  R+
Sbjct: 207 WGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFRV 257


>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1280

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 520 TRQRPCRCVVGKTPRLKSIYNRSRPLARLSNDTC 621
           T Q+PC C+   T   KS+ +R +  A+ S   C
Sbjct: 649 TEQKPCCCLAYDTDLTKSLKDRGKNTAQSSRGRC 682


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 334 YKGDVARLRRILQQKDVDDLVKFACNVMWERAYENHYTLGQQLSIRITT--KLIQSGLDF 507
           +KG+   LR ++  + +D L  +   + W R   N Y+L +       T   ++  G   
Sbjct: 690 FKGNKFDLRYVVLVRSIDPLEIYLIEIFWVRLSNNPYSLEKHSFFEYETHFTVMNYGRKL 749

Query: 508 NISPTRQ 528
           N  PT +
Sbjct: 750 NHKPTAE 756


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,185
Number of Sequences: 28952
Number of extensions: 314756
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)