Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120652.seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   5.9  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    26   5.9  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   5.9  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.9  

>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 200 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 328
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 IVNGQYVSTSTASTNRRLSMPTKSSTCS 262
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 315 LITKSGVIQLIMKSKLPXAIELQEWLL 395
           L+ K GV+ L+ K KLP ++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 355 PNC-LXP*NYK-NGFWRRSFLKCYARXKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRK 528
           P C L P N +  GF    +   Y      PAV +D  D +    ++T+  T+ T++++ 
Sbjct: 52  PTCYLCPGNIRATGFENPKYETTYVFPNDYPAVRVDQPDYMQDESEITKGNTLKTRMFKT 111

Query: 529 QTDRSFC 549
           +  +  C
Sbjct: 112 EGVKGKC 118


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 546 LFANEMIVARRDAETARQDCENAXRETAHWANR-MADIAQDVIAK 677
           +FANE+++ + DA++ +QD E    +   W N  + +I +D   K
Sbjct: 556 IFANEILIEQADAQSFKQDEEVTLMD---WGNAYVREINRDASGK 597


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 118 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 243
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,493
Number of Sequences: 5004
Number of extensions: 60494
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)