Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120652.seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   5.5  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    28   5.5  
Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    28   7.3  
AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane...    28   7.3  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 136 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHML-QIAWQ---SRATRCICT 303
           R   +D  +SLK V+  + + V +DG+YK        +++ + Q+AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 304 HTQCSLPN 327
             + S PN
Sbjct: 153 KDEISPPN 160


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 513  ADLAEANRSLILFANEMIVARRDAE---TARQDCENAXRETAHWANRMADIAQDVIA 674
            A +  ANR  + F+NE+  A+R AE     RQ+  N  +  A    ++ +  +D +A
Sbjct: 1312 AKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESIEDEVA 1368


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
            T18D3.4 protein.
          Length = 1947

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 513  ADLAEANRSLILFANEMIVARRDAE---TARQDCENAXRETAHWANRMADIAQDVIA 674
            A +  ANR  + F+NE+  A+R AE     RQ+  N  +  A    ++ +  +D +A
Sbjct: 1312 AKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESIEDEVA 1368


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
            protein.
          Length = 1947

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 513  ADLAEANRSLILFANEMIVARRDAE---TARQDCENAXRETAHWANRMADIAQDVIA 674
            A +  ANR  + F+NE+  A+R AE     RQ+  N  +  A    ++ +  +D +A
Sbjct: 1312 AKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKESIEDEVA 1368


>Z68120-1|CAA92199.3|  711|Caenorhabditis elegans Hypothetical
           protein T24C2.1 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -1

Query: 662 LRNVRHAVGPVRRFAXRVFAILPSRFSVASSHNHFVGKQNERSVCFRQICVATVNFCVRS 483
           +RNV H+V  V+++   V      RF   + ++  +  + + S C+    +++   C  S
Sbjct: 572 IRNVTHSVPTVKKYDKFVNNNADWRFDDKAINDSDIVSEKQTSACYNATIISSQRQCKWS 631

Query: 482 SI---LAITSFVSI 450
            +   L I SF S+
Sbjct: 632 GVEHLLLIWSFASL 645


>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 296 IQRVALLCHAIWSMCWIWSACSN---VDLYLPSTWTRIARSQF 177
           IQR +L+  AI++ CW  S  +N   +D  +P T T +  + F
Sbjct: 4   IQRYSLVFCAIFATCWTASVVNNKQVIDTSVPQTETTLNDADF 46


>AF218866-1|AAF67103.1|  711|Caenorhabditis elegans transmembrane
           protein RAM-5 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -1

Query: 662 LRNVRHAVGPVRRFAXRVFAILPSRFSVASSHNHFVGKQNERSVCFRQICVATVNFCVRS 483
           +RNV H+V  V+++   V      RF   + ++  +  + + S C+    +++   C  S
Sbjct: 572 IRNVTHSVPTVKKYDKFVNNNADWRFDDKAINDSDIVSEKQTSACYNATIISSQRQCKWS 631

Query: 482 SI---LAITSFVSI 450
            +   L I SF S+
Sbjct: 632 GVEHLLLIWSFASL 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,290
Number of Sequences: 27780
Number of extensions: 367342
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)