Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120645.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   1.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   3.4  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.5  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   5.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.9  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.8  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   7.8  

>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 332 LNHARFGNEHCVWVQIQRVALLCHAIGAWCWIWSACSNVDLYLPSTW 192
           L+ + FG    +W  + R  L C   G   WI   C  V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLACVWYGVQAWIGGEC--VVLMIRSIW 167


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 454 DVIAKIDDLTQKLTVANA 507
           D  +KID LT+KL VANA
Sbjct: 618 DSASKIDSLTEKLKVANA 635


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 583 SRFSVASSHNHFVGKQNERSVASAK 509
           S FS + SHNH    Q E+S +++K
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSK 561


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 623 VRRFRGARFRNLAEPFQRRVEPQSF 549
           VRR+R    R L  PF+R  +P+ F
Sbjct: 222 VRRYRDGSGRQLFAPFERLPDPRMF 246


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 191 STSTASTNRRLSMPTKSSTMLR*RGKAGRPAVFAPTHSAHYQI 319
           S+S++ ++ R S  T S      +  + RP VF  T  +HY I
Sbjct: 162 SSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNI 204


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 109 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 234
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 536 LFANEMIVARRDAETARQDCE 598
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,153
Number of Sequences: 5004
Number of extensions: 57466
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)