Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120645.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.50 
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)                   28   6.2  
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)          28   8.2  

>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 298 CGCKYSGSPCFATLSEHGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 137
           C C Y G+     +SE  A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 231 RPNPAPCSDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSK 350
           RP+  PC   ++ +    +LH  ++L+TK G ++++   K
Sbjct: 125 RPSSLPCGRCLSDRDASKFLHTTSILLTKKGSLKIVFNEK 164


>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
          Length = 1195

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 181  AIRVHVDGKYKSTFEHADQIQHHAPIAWQSRATRCICTHTQCSLPNLA*FN 333
            A+R+HV G  K     + Q+  HAP A  S     +C  T C   N   FN
Sbjct: 1107 ALRLHVTGVTKLLLPLSRQLASHAPSATASVHRTLVCVAT-CVSTNKMRFN 1156


>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
          Length = 534

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -1

Query: 319 DLVMSTVCGCKYSGSPCFATLS-----EHGAGFGRHAQTSICTCRRRGHVLPVHNLHILN 155
           +L +ST+C  ++SGS     LS      H    G  A ++I  CR  G    V NL    
Sbjct: 332 NLALSTICLSRHSGSVDILALSTFWLCRHFGSVGILALSTIWLCRHSG---SVDNLDQST 388

Query: 154 CWRC 143
            W C
Sbjct: 389 FWLC 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,614,563
Number of Sequences: 59808
Number of extensions: 482618
Number of successful extensions: 1257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)