Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120645.seq
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X95246-1|CAA64535.1|  544|Drosophila melanogaster Rot57 protein ...    30   3.4  
AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA...    30   3.4  
AE014296-347|AAF47561.2| 1314|Drosophila melanogaster CG13921-PA...    29   7.9  

>X95246-1|CAA64535.1|  544|Drosophila melanogaster Rot57 protein
           protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 634 RLAQCAVFAARVFAILPSRFSVASSHNHFVGKQNERSVASA 512
           R A     AAR+  +LP   +VA+S  H+ G    R  A A
Sbjct: 277 RAALALALAARILNVLPRALAVAASGAHYEGPSGHRFEAGA 317


>AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA
           protein.
          Length = 1860

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 295 GCKYSGSPCFATLSEHGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRC 143
           G  YS S C A ++    G   +A  S  T R R  +LP+ +L  +    C
Sbjct: 801 GKSYSSSECLADVTMPSYGGNSYASRSKSTSRSRKSMLPIRDLSEMRTDEC 851


>AE014296-347|AAF47561.2| 1314|Drosophila melanogaster CG13921-PA,
           isoform A protein.
          Length = 1314

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 400 LKCYARXKYAPAVEMDTNDVIAKIDDLTQKLTVANAVWR 516
           +K YA  K+AP +  D   V+ ++ DL    + A+A WR
Sbjct: 292 MKEYA--KFAPGISTDLPSVLFRVTDLPPVASAASAWWR 328


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,673,382
Number of Sequences: 53049
Number of extensions: 716404
Number of successful extensions: 1797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1797
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)