Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120645.seq
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   6.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 317 FGNEHCVWVQIQRVALLCHAIGAWCWIWS 231
           FG++  V   + R    C+A GA+ WI S
Sbjct: 348 FGSDQEV-AGVMRAVKRCNATGAFSWIGS 375


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 184 IRVHVDGKYKSTFEHADQIQH 246
           + V+ DG Y + FE ++ I H
Sbjct: 34  LEVNFDGNYINNFETSNGISH 54


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 529 RSVASAKLRWPPSIF 485
           RS+ S+ LR+P SIF
Sbjct: 379 RSIYSSLLRYPRSIF 393


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 205 CRRRGHVLPVHNLHILNCWRCPWPQ 131
           CR + HV  +H+  ++  +R P  Q
Sbjct: 148 CRPKIHVFSLHDNKLITMYRFPQNQ 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,174
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)