Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120645.seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79640.1 68414.m09286 protein kinase family protein contains ...    30   1.3  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    30   1.7  
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain...    29   3.8  
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain...    29   3.8  
At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    29   3.8  
At5g08630.1 68418.m01026 DDT domain-containing protein low simil...    28   6.7  
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    28   6.7  

>At1g79640.1 68414.m09286 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 694

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +1

Query: 109 GDEQPVRFVAKD--IASSLKYVNCE-RAIRVHVDGKYKSTFEHAD--QIQHHAPIAWQSR 273
           GD+ P     K    ASSL   + + +   V   G++K T E+ D  ++   +PI  +S 
Sbjct: 511 GDDVPTEMAVKPPKAASSLDESDDKSKPPVVQQRGRFKVTSENLDIEKVVAPSPILQKSH 570

Query: 274 ATRCICTHTQCSLPN 318
           + + +C H+  SLP+
Sbjct: 571 SMQVLCQHSSASLPH 585


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 175 ERAIRVHVDGKYKST-FEHADQIQHHAPIAWQSRATRCICTHTQCSLP 315
           E AI   +  KYK+  F H + + HH     + R   C C +   SLP
Sbjct: 77  EDAISEFIKSKYKNLPFAHTNLLSHHLAKLVEKREILCDCNNDCYSLP 124


>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 870

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 49  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 189
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to rho-GTPase activating protein [Homo
           sapiens] GI:14245732; contains Pfam profiles PF00169: PH
           domain, PF00620: RhoGAP domain
          Length = 822

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 49  QVKIGEFKFGEDTFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIR 189
           Q   G F    DT   +Y+       RF+ +D  S+L YVN ER  R
Sbjct: 691 QTHFGSFSDARDTH--QYLQNHNPQKRFLQQDFDSTLAYVNHERKQR 735


>At5g04970.1 68418.m00526 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 624

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 509 FGGSNRSLILFANEMIVARRDAETARQDCENARRENGALGQPHGG 643
           FGG N+ +      +I   R      +DC  A R  G LG+  GG
Sbjct: 256 FGGGNKPVREPLETLIKVLRKTCDKGKDCRKANRNLGELGETSGG 300


>At5g08630.1 68418.m01026 DDT domain-containing protein low
           similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
           finger domain protein 1A (ATP-utilizing chromatin
           assembly and remodeling factor 1) (ATP-dependent
           chromatin remodelling protein) (Williams syndrome
           transcription factor-related chromatin remodeling factor
           180) {Homo sapiens}; contains Pfam profile PF02791: DDT
           domain
          Length = 723

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 367 NYKNGFWRRSFLKCYARXKYAPAVEMDTNDVIAKIDDLTQKL 492
           ++K   + R+FLK + R     ++    ND +AK  ++T+K+
Sbjct: 170 SWKKFPFSRNFLKSFIRDSTCHSIPWVVNDYLAKAHEITRKI 211


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 176 NGQYVSTSTASTNRRLSMPTKSSTMLR*RG--KAGR--PAVFAPTHSAHYQI 319
           NG   S +T  ++RR S+P K     +  G  ++GR  P+  APT SA  +I
Sbjct: 472 NGNVASENTKPSDRRASLPAKIENHHQDDGLTQSGRKIPSYMAPTASAKARI 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,644
Number of Sequences: 28952
Number of extensions: 318858
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)