Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120644.seq
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    27   0.19 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    27   0.19 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    24   1.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 4   HEHTFLRIQRYQIFIYVYLYLLHCAYI 84
           HE   LR    Q F+YV LY+L   ++
Sbjct: 127 HETNLLRNVSVQFFVYVILYILATVFL 153


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 4   HEHTFLRIQRYQIFIYVYLYLLHCAYI 84
           HE   LR    Q F+YV LY+L   ++
Sbjct: 127 HETNLLRNVSVQFFVYVILYILATVFL 153


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 37  QIFIYVYLYLLHCAYIIDVIQS*SLRDLSVSIQNDQCFL*ITTMYCNVVLNYHL---NRF 207
           Q+F+Y++ YL    Y+        +     +I ND C L    +   +++NY L   NRF
Sbjct: 134 QLFLYIFTYLSVTCYVTYAWS--PIDHTESNIINDMCSL-YYILQITLIVNYALALKNRF 190

Query: 208 *KCQ 219
            + Q
Sbjct: 191 KELQ 194


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 467 YLSRKKNIYL*NCLRSAK*QIR 402
           YLSR + I +  CLR ++ Q++
Sbjct: 141 YLSRLRRIEIATCLRLSEKQVK 162


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 567 LINLFIAYFTY*F 529
           LIN+F +YF Y F
Sbjct: 382 LINIFASYFAYIF 394


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 567 LINLFIAYFTY*F 529
           LIN+F +YF Y F
Sbjct: 382 LINIFASYFAYIF 394


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 567 LINLFIAYFTY*F 529
           LIN+F +YF Y F
Sbjct: 382 LINIFASYFAYIF 394


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 567 LINLFIAYFTY*F 529
           LIN+F +YF Y F
Sbjct: 382 LINIFASYFAYIF 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,472
Number of Sequences: 336
Number of extensions: 2718
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)