Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120640.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   1.9  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    27   3.4  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   4.5  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   5.9  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   5.9  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   5.9  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   7.8  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   7.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   7.8  

>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 175 WPFRHVKSLHDPKVLDEYLCLNANETT 95
           WP   +KS+  P  +   +CL  NE+T
Sbjct: 156 WPLNIIKSIGLPSQIKRKICLQLNEST 182


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 505 LYGHFISTG---IHVPSAREKYASGEAACKPNELKNMPQSKTVSTTAL 371
           LY +  S G   IH PS    Y + +   KP +LKN+  S  +   ++
Sbjct: 98  LYQNVSSCGFRDIHRPSKPRHYLAHKVMAKPGKLKNILGSNVIDVNSI 145


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 288 GNAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDA 449
           G  ++   +E + ++L  M+EI + K+   V + V+    +FS     AA+ DA
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSD-SQRAATKDA 163


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 648 CL*CASVLTISNWGVPFLLTNSAVCFTR--YLRLPFPNSTRICSTVVSRN 505
           CL C ++ T S W V  L     VC +   ++R+   +  R+  T V +N
Sbjct: 247 CLQCITLPTTSVWSVSSLPNGDLVCGSSDGFVRIFTVDKVRVAPTEVLKN 296


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 157 KSLHDPKVLDEYLCLNANETTALDSTRSFSHNC 59
           KS H  ++LD+   L+    T  D+T  F  NC
Sbjct: 78  KSHHRHQLLDQNSELSQENLTKCDTTHDFEKNC 110


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 264 LQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVETV 392
           ++ P  LFG ++E+ ++    ++     E I+N++ +  VET+
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETI 178


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 100 SRWRSNKDI-HPKPLDRAEILRVEKATRGQSKNEL 201
           S + S+ D+ H K L+++EIL  ++  RGQ + +L
Sbjct: 190 SEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDL 224


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 184 VPWWPFRHVKSLHDPK 137
           +PW P +H+K  HD K
Sbjct: 259 IPWPPNQHIKFAHDDK 274


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 569 RDTCDCRSPTRHASAPRSCLVIVRT-FYFHRNPRSVGERKIRIGRSGVQTQRA 414
           +++  CR+   H++   +   I  + FY+HR P+   +   ++G   ++  R+
Sbjct: 131 KNSASCRNTFEHSAYHSNREEISSSGFYYHRKPQLFEKSLEKLGNKSIEANRS 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,862
Number of Sequences: 5004
Number of extensions: 64161
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)