Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120640.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 31 1.2
02_05_0314 + 27818077-27818809,27818839-27818906,27819345-278195... 31 1.2
06_03_1280 - 28930959-28931540 29 2.7
12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792... 29 4.7
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553... 29 4.7
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 28 6.2
06_01_1138 - 9429447-9433868 28 6.2
08_01_0242 - 2007601-2007677,2007792-2007843,2008117-2008188,200... 28 8.1
07_03_0104 + 13434954-13435145,13436220-13436288,13436386-134365... 28 8.1
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 28 8.1
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 115 NKDIHPKPLDRAEILRVEKATRG 183
N DIH +PL AE ++++KA RG
Sbjct: 394 NSDIHSRPLSDAERVKIKKALRG 416
>02_05_0314 +
27818077-27818809,27818839-27818906,27819345-27819528,
27819700-27819800,27820479-27820586,27820728-27820946
Length = 470
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -2
Query: 553 AVPQLDTHLLHGRVS*LYGHFISTGIHVPSAREKYASGEAACKPNELKNMPQSKTVST 380
+V ++ TH L V+ Y H S G S+ + S +A KP + KN +K ST
Sbjct: 66 SVAKICTHPLSSHVNHCYHHSRSLGFSSVSSSRRMYSSDARAKPEDYKN-AMAKVSST 122
>06_03_1280 - 28930959-28931540
Length = 193
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 504 NYETRPWSRCVSSWGTAIASIA*NTPRCWLTRKARPSLKWSKRMRITSKYSGR 662
++ +P S C SS A A+ + + RC+L ARP+ W R+ + GR
Sbjct: 129 HHPPQPSSSCSSSKPAAAAASSGSPERCYLAAAARPA-AWKPRLDRIDESFGR 180
>12_01_0846 -
7920960-7921112,7921247-7921373,7921455-7921585,
7921992-7922033,7922126-7922167,7922416-7922508,
7922590-7922685,7923281-7923448,7923519-7923594,
7923687-7923766,7923855-7923950,7924023-7924392,
7925356-7925431,7925559-7925649
Length = 546
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 161 VSKRPPGDKAKMSCGRYCVWIAAQRLHRPI 250
+S++PPG+K GR C I Q+ + P+
Sbjct: 429 ISRKPPGEKHGDRIGRICTHILKQQSYYPL 458
>06_03_0253 +
18753901-18754278,18754873-18754968,18755167-18755376,
18756028-18756093,18756379-18756576,18756616-18756810,
18756968-18757014,18757147-18757234,18757331-18757681,
18758593-18759123
Length = 719
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = +3
Query: 216 FGSQHSVCIVQFVGNMLQRPALLFGNAQESHVK-ETNG----IMLDHMREIIKNKITSAV 380
F S H+VC +G ++ + + +E VK ET G I +++I NKI +
Sbjct: 484 FESAHTVC--SEIGKLIGQDREMEQRDKERVVKLETLGNINFIRALLKKKLITNKIIDHI 541
Query: 381 VETVLDCGMF-FSSLG 425
V+ V+DC F F LG
Sbjct: 542 VQAVMDCCKFRFEPLG 557
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 684 IGAFITYICRCICL*CASVLTISNWGVPFLLTNSAVC 574
+ F +C CI L C + I +PFL+T +C
Sbjct: 858 VQGFPRLLCLCIVLQCPTFPVIEEGALPFLVTLQLLC 894
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 212 CVWIAAQRLHRPIRRQHVTTTSAFVWKRTRKSRQRNQRHHVRPH 343
C+W A+ +HR + + H T + +R R +R R+ V H
Sbjct: 102 CLWWASWLVHRVVAQHHAATRLRELKERARDVGERRIRYGVVVH 145
>08_01_0242 -
2007601-2007677,2007792-2007843,2008117-2008188,
2008710-2009219
Length = 236
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 498 DILFPPESTFRRREKNTHRAKRRANPTS*RTCRNPK 391
D++ P RRREK + +RR +P + R R+P+
Sbjct: 27 DVIGPWWIERRRREKEREKRRRRRSPAARRGTRSPE 62
>07_03_0104 +
13434954-13435145,13436220-13436288,13436386-13436523,
13436612-13436729,13437214-13437296,13438305-13438400,
13438552-13438720,13438798-13438940,13439027-13439113,
13439197-13439382,13439956-13440123,13441028-13441148,
13441453-13441522,13441694-13441781,13441866-13442018
Length = 626
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 507 YETRPWSRCVSSWGTAIASIA*NTPRCWLTRKARPSLKWS 626
Y++ PW V G A+ +A T RC + + ++K+S
Sbjct: 106 YQSHPWVLAVLPDGKALGVLADTTQRCEIDLREESTIKFS 145
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 447 AYFSLADGTWIPVEIKCPYNYETRPWSRCVSSW 545
+Y L DG +P +++ +T PWSR SW
Sbjct: 398 SYALLGDGINVPDQVRKAVGVKT-PWSRLAESW 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,940,266
Number of Sequences: 37544
Number of extensions: 448740
Number of successful extensions: 1216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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