Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120640.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 30   2.1  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_51175| Best HMM Match : p450 (HMM E-Value=0)                        29   4.8  
SB_15009| Best HMM Match : TP2 (HMM E-Value=3.3)                       29   4.8  
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   4.8  
SB_5471| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.3  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   28   6.3  
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           28   8.3  
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_2139| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_34486| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_31685| Best HMM Match : DUF1540 (HMM E-Value=3.6)                   28   8.3  
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = +3

Query: 165 RKGHQGTKQK*AVDAIAFGSQHSVCIVQFVGNMLQRPALLF---GNAQESHVKETNGIML 335
           R G  G       DA A   +  +  VQFV     R A+ F    N  ESH       +L
Sbjct: 352 RSGVFGVLVDDVTDAAAL--EQMITFVQFVDTEENRAAVAFLGTKNVLESHESANTEALL 409

Query: 336 DHMREIIKNKITSAVVETVLDCGMFFSSL 422
           D+  E+++   T+ ++  ++ CG+  S++
Sbjct: 410 DNFTELLE---TTIIIIIIITCGLELSNI 435


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 477 STFRRREKNTHRAKRRANPTS*RTCRNPKPFQRPR 373
           ST RR  K+THR K+        + R  KP +RPR
Sbjct: 508 STTRRPRKSTHRPKKPTRRPRKNSPRTRKPTRRPR 542


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 467  RNVDSGGNKMSVQLRDTTVEQMRVELGNG 553
            + VD  GNK+ V+  D+ V +M V+L NG
Sbjct: 1648 QGVDGNGNKIEVEKFDSYVYRMEVKLSNG 1676


>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 477 STFRRREKNTHRAKRRANPTS*RTCRNPKPFQRPR 373
           ST RR  K+THR K+        + R  KP +RPR
Sbjct: 145 STTRRPRKSTHRPKKPTRRPRKNSPRTRKPTRRPR 179


>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
          Length = 408

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -1

Query: 563 TCDCRSPTRHASAPRSCLVIVRTFYFHRNPRSVGE-RKIRIGRSGVQTQRAKEHAAIQNR 387
           TC+          P+ CLV++  +  HR+P    E  K +  R   + ++A+ H      
Sbjct: 296 TCNQSCTINGQFFPKGCLVMIPVYAIHRDPEIWPEPEKFQPERFTAEAKQAR-HPYAYLP 354

Query: 386 FNDRARNFIFYNFA 345
           F +  RN I   FA
Sbjct: 355 FGEGPRNCIGMRFA 368


>SB_15009| Best HMM Match : TP2 (HMM E-Value=3.3)
          Length = 151

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 221 IAAQRLHRPIRRQHVTTTSAFVWKRTRKSRQRNQRHHVRPHARNYKK*NYERGR 382
           I A     P  RQ++T   A+  +R  +  Q+ Q    RP AR      Y RGR
Sbjct: 69  IQAPTKRTPHTRQYLTARLAYPKQRGNQQAQQMQHVEERPEARPGTSAKYFRGR 122


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -3

Query: 576  CFTRYLRLPFPNSTRICSTVVSRNCTDILFPPESTFRRREKNTHRAKRRANPTS*RTC 403
            C T +  +P    T ICST  +   T I           + + H ++ +A P    TC
Sbjct: 1246 CLTAHPTIPSQGKTLICSTCSAAFSTQICLKIHMDTHHSKPSEHTSQEQATPFKCLTC 1303


>SB_5471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 563 TCDCRSPTRHASAPRSCLVIVRTFYFHRNPRSVGE-RKIRIGRSGVQTQRAKEHAAIQNR 387
           TC+          P+ C+V++  F  HR+P    E  K +  R   + ++A+ H      
Sbjct: 421 TCNQSCTINGQFFPKGCIVLIPVFAMHRDPEIWPEPEKFQPERFTAEAKQAR-HPYAHLP 479

Query: 386 FNDRARNFIFYNFA 345
           F    RN I   FA
Sbjct: 480 FGGGPRNCIGMRFA 493


>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 931

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 159
           KF NYVK+     + +   RSN  I   P D+A++L
Sbjct: 323 KFWNYVKSRRSEVSDIPSLRSNDGISISPRDKAQVL 358


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +3

Query: 291 NAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDAYFSLADG 470
           N  +SH      I + H+  +IKN+ T+  V    D  +      L    P+A   + D 
Sbjct: 16  NLVDSHSNALYSIGITHLHHVIKNQNTNLHVTPTHDNSLLDKEPSLDDNGPEAAGRMTD- 74

Query: 471 TWIPVE 488
            W P E
Sbjct: 75  -WSPYE 79


>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2124

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 52   KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 159
            KF NYVK+     + +   RSN  I   P D+A++L
Sbjct: 1713 KFWNYVKSRRSEVSDIPSLRSNDGISISPRDKAQVL 1748


>SB_28641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 468 RRREKNTHRAKRRANPTS*RTCRNPK 391
           RR  +   R +RRA P   R CR P+
Sbjct: 11  RRHSRRRRRPRRRARPRRRRPCRRPR 36


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 343 MWSNMMPLVSLT*LSCAFPNKSAGRCNMLPTNWTMQTLCCDPNAIAST 200
           M+ N MP  SL   +   P  +   C M    W  + L   PN  AS+
Sbjct: 1   MYQNKMPRYSLLKNTLNTPPSTEASCGMTMAEWLTKLLFARPNQQASS 48


>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 290 KRTRKSRQRNQRHHVRPHARNYKK*NYER 376
           K  R+ RQ +QR H R H R +++ +  R
Sbjct: 172 KHQRRQRQEHQRRHRRQHQRRHRQKHQRR 200


>SB_2139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 159
           KF NYVK+     + +   RSN  +   P D+A++L
Sbjct: 109 KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 144


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 229 CCDPN-AIASTAHFCFVPWWPFRHVKSLHDPKVLD 128
           C  PN  IAS  H  F   W F ++K+ H+ + L+
Sbjct: 598 CSVPNETIASVLHQTFSASWSFSNIKTTHELRFLN 632


>SB_34486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 159
           KF NYVK+     + +   RSN  +   P D+A++L
Sbjct: 51  KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 86


>SB_31685| Best HMM Match : DUF1540 (HMM E-Value=3.6)
          Length = 785

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = -3

Query: 597 LLTNSAVCFTRYLRLPFPNSTRICSTVVSRNCTDILFPPESTFRRREKNTHRAK----RR 430
           LLT S++  TRYLR P    ++  S ++   C  ++  P +   R+     RA     RR
Sbjct: 564 LLTASSIPMTRYLRRPPQEDSKDSSLIMVHGCRRLI--PMARAERQVNELVRAPLNVFRR 621

Query: 429 ANPTS*RTCRNPKP 388
               +   CR+  P
Sbjct: 622 QRRQTSAVCRSDPP 635


>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 159
           KF NYVK+     + +   RSN  +   P D+A++L
Sbjct: 33  KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 68


>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 127 EYLCLNANETTALDSTRSFSH 65
           EYLCLNA E      T SF+H
Sbjct: 8   EYLCLNATERPVSIQTLSFAH 28


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = -2

Query: 265 NMLPTNWTMQTLCCDPNAIASTAHFCFVPWWPFRHVKSLHDPKVLDEYLCLNANET 98
           N L  +WT +    +P+AI  + H   V +  +  ++    P++ +  +  +A +T
Sbjct: 244 NSLNASWTSRQSVPEPSAIEKSVHSAVVTFEDYHEIQPCEIPRLKERRMSDSATQT 299


>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  KFNNYVKTIELSRAQLSRWRSNKDIHPKPLDRAEIL 159
           KF NYVK+     + +   RSN  +   P D+A++L
Sbjct: 62  KFWNYVKSRRSEVSDIPSLRSNDGVSISPRDKAQVL 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,326,768
Number of Sequences: 59808
Number of extensions: 531914
Number of successful extensions: 1611
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)