Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120640.seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02890.1 68416.m00284 PHD finger protein-related contains low...    29   3.9  
At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329...    28   6.8  
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide...    28   6.8  
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide...    28   6.8  
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide...    28   6.8  
At2g26700.1 68415.m03203 protein kinase family protein contains ...    27   9.0  
At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protei...    27   9.0  

>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 554 CRSPTRHASAPRSCLVIVRTFYFHRNP---RSVGERKIRIGRSGVQTQRAKEHAAIQNRF 384
           C +P ++   P SC+   R  + H NP   +S+ +R +   +S ++ + AKE  A     
Sbjct: 808 CSNPPKNTPLPASCVSPNRDTFRHENPSNKKSLTDRTLSRMQSCMKEEDAKEGKACSGTE 867

Query: 383 NDRA 372
            + A
Sbjct: 868 KENA 871


>At4g20010.1 68417.m02929 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 371

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 452 FFSRRRNVDSGGNKMSVQLRDTTVEQMRVELGNGNRKYRVKHTA 583
           F+ R   + +G    S Q+R  T   +  + GNG RK R K  A
Sbjct: 17  FYPRASEITTGKRITSPQIRLYTAAAVGGKTGNGERKQRAKAPA 60


>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 RNQRHHVRPHARNYKK*NYERGR*NGFG 397
           + Q+HH  PHA  Y    Y+R   NG+G
Sbjct: 328 KQQQHHHNPHA--YNNPRYQRNDNNGYG 353


>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 RNQRHHVRPHARNYKK*NYERGR*NGFG 397
           + Q+HH  PHA  Y    Y+R   NG+G
Sbjct: 328 KQQQHHHNPHA--YNNPRYQRNDNNGYG 353


>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 314 RNQRHHVRPHARNYKK*NYERGR*NGFG 397
           + Q+HH  PHA  Y    Y+R   NG+G
Sbjct: 328 KQQQHHHNPHA--YNNPRYQRNDNNGYG 353


>At2g26700.1 68415.m03203 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 525

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +1

Query: 406 CSLARWVCTPLRPMRIFLSPTERGFRWK*NVRTITRHDRGADACRVGERQSQVSRETHRA 585
           CS      TPL P+    SPT    R K NV T T H+  A       + + VSR   R+
Sbjct: 268 CSTPSCTTTPLNPVISCFSPTSSRRRKK-NVVTTTIHENAAGTSD-SVKSNDVSRTFSRS 325


>At1g08150.1 68414.m00898 sodium/hydrogen exchanger family protein
           contains InterPro entry IPR006153: Sodium/hydrogen
           exchanger
          Length = 815

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = -2

Query: 409 NMPQSKTVSTTALVILFFIISRMWSNMMPLVSLT*LSCAFPNKSAGRCNMLPTNWTMQTL 230
           ++P  ++V    L +  F    +    +P+  +T  S      +  + N+LP +WT+Q +
Sbjct: 64  SLPHLESVIVLVLCLWQFFYLSLKKIGLPVPKIT--SMMIAGAALSQTNLLPNDWTIQHI 121

Query: 229 C----CDPNAIASTAHFCFVPWWPFRHVK 155
                  P    +   F FV +W    VK
Sbjct: 122 LFPDDTRPKVPETLGGFAFVFYWFIEGVK 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,463
Number of Sequences: 28952
Number of extensions: 347792
Number of successful extensions: 1106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)