Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120621.seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    30   0.36 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   1.1  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.9  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 657 IFKSVFNKYSFLQI*HRI*IYFPMCKSVIKRSLQK 553
           +FK +   Y+FL + + + I FP+  S +K+SL+K
Sbjct: 61  LFKVINTTYTFLYLRNSLTITFPLLNSSVKQSLKK 95


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/51 (43%), Positives = 27/51 (52%)
 Frame = -1

Query: 360 LAILKNY*INKKLIRTSAFRLRTRKIHFTYL*SK*LNSTNTY*HYIIPIVC 208
           L+IL NY    K IR   FR R R  +F YL S  L+   T  H+I  +VC
Sbjct: 303 LSILVNY---CKSIRFRCFRCR-RVEYFFYLDSNPLSIQRTITHFIKKLVC 349


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 255 LNSTNTY*HYIIPIVCMSTLLSEEVHNHYYSAINLL 148
           +N+  TY H+++P++ +     + + +  Y   NLL
Sbjct: 406 MNARRTYVHWVVPLIDIKMEARQSIADLSYKITNLL 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,054
Number of Sequences: 5004
Number of extensions: 48492
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)