Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120621.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    29   4.2  
AF003145-8|AAB57721.2|  700|Caenorhabditis elegans Hypothetical ...    28   7.3  

>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 453 NQSVTQLL*QN*FIEFHVPIHFRRIDTIKVILAILKNY*INK 328
           N+  + L+  N FI  + P+H+ ++ ++KV + I+  Y + K
Sbjct: 93  NEFQSLLIAINRFIAMYAPLHYNKLCSVKVSVVIMALYYVKK 134


>AF003145-8|AAB57721.2|  700|Caenorhabditis elegans Hypothetical
           protein B0414.8a protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 414 IEFHVPIHFRRIDTIKVIL-AILKNY*INKKLIRTSAFRLRTRKIHFTYL 268
           I+FH+ IHF R   I VI+  +LK +  + +L   S F +   ++   YL
Sbjct: 590 IDFHLQIHFNRASIITVIVKVVLKIFIESIRLQTYSKFGVEQVQVDCYYL 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,288
Number of Sequences: 27780
Number of extensions: 262697
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)