Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120621.seq
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.4  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 197 CYLKRYTIIITVLSIYYSFKFMYNLL*SSIDNNFF 93
           C++  Y I+I   +I+Y F  M + L     NN++
Sbjct: 71  CWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYW 105


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 88  FVIRANNIRNSLPKI*TIFNPKIFHIG 8
           F+  A+ + NSLPK+  I   +I+ +G
Sbjct: 274 FMTLASKVENSLPKVSYIKASEIWFLG 300


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 361 NHFNGIYSSKMYRYMKFNKLILS*KLRY 444
           NH+  +Y  K   YM    L+LS  +++
Sbjct: 109 NHYLWLYHDKTLLYMSKLTLVLSCAMKF 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,700
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)