Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120619.seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    35   0.006
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.39 
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   6.3  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.4  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   8.4  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 130 MTRGNQRDLARAKNQKKQVEMQKKKNAXEKT 222
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 136 RGNQRDLARAKNQKKQVEMQKKKNAXEKTGXSLXERNPRXXNYPXXTTEKKRKS*Q--QR 309
           + N   L     +KK+ E +K+K + +K    L E N           ++KRKS +  Q 
Sbjct: 14  KSNLNFLNELIEEKKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQS 73

Query: 310 NIISKQR 330
           NII K++
Sbjct: 74  NIIKKRK 80


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +1

Query: 142 NQRDLARAKNQKKQVEMQKKKNAXEKTGXSLXERNPRXXNYPXXTTEKKRKS*QQRN 312
           +Q   + A NQ         K + E    +   +     N    T E+KRKS  +RN
Sbjct: 426 SQEPSSNANNQSSPTSSINGKASSESANGTSYSKGSSRRNSKNETDEEKRKSFLERN 482


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 136 ESF*LDNFTKEKFTFVATYNYFKNTVK 56
           ESF  D+F   K+T V  Y  +++ VK
Sbjct: 90  ESFVGDDFVMPKYTLVLPYRVYRDHVK 116


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 115 FTKEKFTFVATYNYFKNTVKAGRYASPV 32
           F  +KF  VA Y + +N VKA  Y   V
Sbjct: 854 FDGQKFIVVARYLFGENIVKAALYEGTV 881


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 121 DNFTKEKFTFVATYNYFKNTV 59
           D F+KE+F+ V  + Y KN+V
Sbjct: 748 DKFSKEEFSSVLPHAYNKNSV 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,405
Number of Sequences: 5004
Number of extensions: 20035
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)