Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120619.seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)                     39   0.002
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.53 
SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)                   27   6.5  

>SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)
          Length = 476

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = +1

Query: 127 RMTRGNQRDLARAKNQKKQVEMQKKKNAXEKTGXSLXERNPR 252
           R++ GNQR+LARAKNQKKQ   +  ++   K G +L +R  R
Sbjct: 214 RVSGGNQRELARAKNQKKQTGKKASEHDANK-GQNLTDRKQR 254


>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 139 GNQRDLARAKNQKKQVEMQKKKNAXEKTGXSLXERNPRXXNYPXXTTEKKRK 294
           GN + L   KN  K+    KKK+  +K   S  ++NP+   Y      K  K
Sbjct: 226 GNGKPLKPKKNYGKKKNYSKKKDYGKKKNYSKKKKNPKNNKYNKKKNRKNSK 277


>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 133 TRGNQRDLARAKNQKKQVEMQKKKNA 210
           T  N ++  R KN+K+ V+ Q+ KNA
Sbjct: 169 TEPNSKNQTRGKNKKESVQEQESKNA 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,016,006
Number of Sequences: 59808
Number of extensions: 142474
Number of successful extensions: 301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)