Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120618.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    26   0.33 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.5  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   9.5  

>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 135 CNSRKPNEGRRRNRFVPSLLSDVWN 209
           C+SR+    RR  R+V +   DVWN
Sbjct: 67  CDSRQVANARRIARYVQTKHPDVWN 91


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 415 CLNCXIYVAVVFTLXIFFTLCI 480
           C+    Y  ++FT+ + F LCI
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCI 133



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 415 CLNCXIYVAVVFTLXIFFTLCI 480
           C+       ++FT+ + F LCI
Sbjct: 145 CIYYFYCAFIIFTVHLLFLLCI 166



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 442 VVFTLXIFFTLCI 480
           ++FT+ + F LCI
Sbjct: 273 IIFTMHLLFLLCI 285


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 17/73 (23%), Positives = 27/73 (36%)
 Frame = -1

Query: 342 PVSHXDAEARVTDAARVDLAHTEDPGAVHYKPPKLQNTLLLTARHSTHPTVAKERSDFVA 163
           PV H D      +     L +      ++Y   KLQ+  LL+ RH     +    S    
Sbjct: 440 PVYHKDPHYGFHNVTNTTLQNLTPQ--LNYISMKLQSFPLLSQRHQIDAKMFCNESSVSN 497

Query: 162 CPRLAFDCYKIVS 124
           C     +C  +V+
Sbjct: 498 CENEYCECTHVVN 510


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 500 IWEFNRRMQSVKNIXKVK 447
           IW  NRRM+  K I  +K
Sbjct: 269 IWFQNRRMKLKKEIQAIK 286


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 500 IWEFNRRMQSVKNIXKVK 447
           IW  NRRM+  K I  +K
Sbjct: 51  IWFQNRRMKLKKEIQAIK 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,311
Number of Sequences: 336
Number of extensions: 2640
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)