Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120618.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     29   3.5  
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629...    28   8.0  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   8.0  

>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 244 EVTEHATXNSQTFHTSDSSEGTKRFRRLPSF 152
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>06_02_0131 +
           12161268-12161781,12162123-12162867,12162950-12162986,
           12163083-12163216,12163298-12163625
          Length = 585

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = -1

Query: 333 HXDAEARVTDAARVDLAHTEDPGAVHYKPPKLQNTLLLTARHSTHPTV----AKERSDFV 166
           H DA   + +A  V    T D    HY    L+   LL A  +  P +    A  R+ F+
Sbjct: 84  HADAARMLLEAGAVCAERTFDGDRCHYAALNLRLRRLLKAFEARPPPLPPLPAALRATFL 143

Query: 165 ACP--RLAF 145
           ACP  R AF
Sbjct: 144 ACPANRAAF 152


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 343 LKNGAGVSNHMWHRLKNDDGDDKPCLN 423
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,706
Number of Sequences: 37544
Number of extensions: 277730
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)