Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120618.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)                    29   3.5  
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
          Length = 553

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 610 HGIVFHGRVKHGXGR 654
           HG+VFHG  +HG GR
Sbjct: 250 HGVVFHGARQHGRGR 264


>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 357 GAVLQPVSHXDAEARVTDAARVDLAHTEDPGAVHYKPPKLQNTL 226
           G + + +S  + +  V +AAR+D  H ED     Y+P + Q +L
Sbjct: 146 GKLWRMLSAAEKQPYVDEAARLDKRHKEDHPDYKYRPRRRQKSL 189


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 232 HATXNSQTFHTSDSSEGTKRFRRLPSF 152
           H T   + F T D  +G++ F R+P+F
Sbjct: 482 HCTQKRRGFQTCDKPQGSQSFPRIPTF 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,205,073
Number of Sequences: 59808
Number of extensions: 325928
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)