Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120618.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    33   0.19 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   3.1  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    29   3.1  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    29   4.1  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      29   4.1  
Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z48543-2|CAA88433.2|  478|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 421 NCXIYVAVVFTLXIF---FTLCIRRLNSQIYVYSXWSXKXLLAVFSXYFH 561
           N   +   +FTL IF   FT  IR L + I   + +S   + A+FS +FH
Sbjct: 104 NAKEHARTIFTLFIFAYAFTPVIRTLTTSISTDTIYSTSIITAIFSCFFH 153


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = -2

Query: 503  YIWEFNRRMQSVKNIXKVKTTAT*IXQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTXT 324
            ++ + N R+Q+  N     T+   I  F   LS+PS+         D P P  S +    
Sbjct: 2593 FLLDLNSRLQTESNSSSTATSGWTINLFPTHLSTPSTMPRSQQKRLDVP-PNNSVHQNSY 2651

Query: 323  QKLGLQTPPG 294
             KLG  + PG
Sbjct: 2652 MKLGYSSDPG 2661


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 168 RNRFVPSLLSDVWNVWLLXVACSVTSAACNERL 266
           R R VP   +  WN W    ACS T  AC  R+
Sbjct: 483 RARAVPE--AGNWNSWSPWTACSATCGACGSRM 513


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 291 DLAHTEDPGAVHYKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 130
           +++H +    V+YKPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 36  EISHVQKLQPVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 291 DLAHTEDPGAVHYKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 130
           +++H +    V+YKPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 36  EISHVQKLQPVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical
           protein M162.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 279 TEDPGAVHYKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVSARF 115
           T + G   Y     +N +L+    ++   + +   DF+A P+L  D ++I +A F
Sbjct: 85  TRNTGLGGYCTNNFKNPVLMRISRNSLNEILRVLEDFLAIPKLEIDHFRIKAAMF 139


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 207 STHPTVAKERSDFVACPRLAFDCYKIVSARF 115
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 207 STHPTVAKERSDFVACPRLAFDCYKIVSARF 115
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


>Z48543-2|CAA88433.2|  478|Caenorhabditis elegans Hypothetical
           protein C18D1.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 415 CLNCXIYVAVVFTLXIFFTLCIRRLN--SQIYVYSXWSXKXLLAVFSXYFHHPKXVIVIX 588
           CL+C   +  +FT+ +    C       +  Y +S  +    L  F+ Y   P    ++ 
Sbjct: 174 CLSCFFQIGPIFTMPVASAFCTSSFGWPAVYYTHSIVTIFIFLLFFTLYRESPVFHTIVT 233

Query: 589 NVELA 603
            +EL+
Sbjct: 234 ELELS 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,856
Number of Sequences: 27780
Number of extensions: 246961
Number of successful extensions: 557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)