Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120618.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    30   1.3  
At4g29280.1 68417.m04186 expressed protein ; expression supporte...    30   1.7  

>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 40  FLNDKVIYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 162
           +L+   ++L+ S    LF    LSLK  +HDFV V++ T++
Sbjct: 15  YLHQAPLFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53


>At4g29280.1 68417.m04186 expressed protein ; expression supported
           by MPSS
          Length = 77

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 277 CMCEVYPGGVCNPSFCVXV*YRLKNGAG 360
           C   ++PG  C+PS CV   Y   NG G
Sbjct: 31  CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,106
Number of Sequences: 28952
Number of extensions: 220813
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)