Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120615.seq
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 100 2e-22
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 33 0.030
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 28 1.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 2.6
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 27 3.4
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 4.5
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.9
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 25 7.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 7.9
>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 198
Score = 100 bits (239), Expect = 2e-22
Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 5/95 (5%)
Frame = +1
Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGL-----TGIAGDR 402
I + + L+IA++HD+AE IVGD+TPH VS EEKHR E EAM +I+ + +
Sbjct: 57 INKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEE 116
Query: 403 MYELYKEYEDQSSPEAKFAKDLDRYDMILQAFEYE 507
+ EL+ EYE S+PEAKF KD+D+++MI Q FEYE
Sbjct: 117 IKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYE 151
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +2
Query: 116 KHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTE 220
K RTGW+ I E+IA HMYRMGI+T L +
Sbjct: 20 KTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND 54
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 33.5 bits (73), Expect = 0.030
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 279 VVNESYLKNFILSNLVGLFSSV-SKNVMIPILYMWPAIVSQSLISQRIQPVLLTCFFEKY 103
++ E L ++S +VG+F + +K I+Y W A + LI Q I P L+ F K+
Sbjct: 201 LLKELSLGGLLMSVVVGVFVKILTKFGDNFIMYAWGAYIVFGLILQTIAPSLIMPLFYKF 260
Query: 102 CVINNNLIRDSL 67
+ N +R +
Sbjct: 261 TPLENGSLRTQI 272
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 513 ENTPKKCQEFFT-ATEGKFDHPFIQDLVKELYLQ 611
E+ PK CQ F+T A EG +D ++ + +Q
Sbjct: 20 EHAPKTCQNFYTLAKEGYYDGVIFHRVIPDFVIQ 53
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/67 (19%), Positives = 33/67 (49%)
Frame = +1
Query: 319 GVSPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRYDMILQAF 498
G P E R+ ++SG + +Y++ +E +D+ + + LD ++ + +A
Sbjct: 591 GFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRAR 650
Query: 499 EYENVKI 519
Y+ +++
Sbjct: 651 GYKALRL 657
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 156 LISQRIQPVLLTCFFEKYCVIN 91
++S R P+++ CF +K C IN
Sbjct: 365 VLSNRYDPIIVFCFSKKECEIN 386
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -2
Query: 282 QVVNESYLKNFILSNLVGLFSSVSKNVMIPILYMWPAIVSQSLISQRIQPVLLTCFFEKY 103
Q++N + I F + S+N+++P+L+ I SL R + +L T F E +
Sbjct: 471 QIINLKRKRKIIFIGFGEEFLTFSENLVLPLLFQ-IKIALPSLAVTRRKEILTTIFQENF 529
Query: 102 CVINNNLI 79
I + I
Sbjct: 530 SDITMDSI 537
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 297 NNALSQVVNESYLKNFILSNLVGLFSSVSKNVMIPILYMWP 175
N + + ++N++ +KNFI S + ++ KNV + L + P
Sbjct: 79 NTSGNSLLNDNDIKNFIRSYAERIVNNEDKNVFLDSLLLSP 119
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = +1
Query: 313 HCGVSPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRYDMI 486
HC P H+ E + S + + + Y EYE+ +S + + + YD +
Sbjct: 84 HCSTQP---HKDEAYSHHGYSSTMALDDSSLAQTYHEYEEGTSGNSPLRRAIGSYDFL 138
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 397 DRMYELYKEYEDQSSPEAKFAKDLDRYDMILQA----FEYENVKILQRNVKSSLLQQREN 564
D+M +L + EDQ+S E + +LD IL+A Y+ +L R S+LL++R
Sbjct: 279 DQMQKLEDKGEDQASAEERAKLELDITGKILRASWCGARYDIQGVL-REACSNLLKKRVP 337
Query: 565 LTTRL 579
RL
Sbjct: 338 TELRL 342
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 42 LSLVAVCSVANHVLSYYLLHNIFQKSMSKERVGSSVILMIVRQ 170
LSL + + YLL++I+Q++M +E +SV+ + Q
Sbjct: 596 LSLFILLLTRLENMGLYLLYDIWQRTMPEEGTLASVMYYVAEQ 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,680
Number of Sequences: 5004
Number of extensions: 59977
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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