Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120615.seq
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0591 + 4384246-4384434,4384531-4384658,4384741-4384778,438... 88 5e-18
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 71 9e-13
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847... 31 0.87
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 31 1.1
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 29 2.6
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 29 3.5
08_02_0351 - 16138147-16138187,16138328-16138480,16138684-161387... 28 6.1
07_01_0366 + 2723069-2723116,2723239-2723488,2723563-2723715,272... 28 6.1
03_04_0032 - 16663018-16663026,16663072-16663235,16663384-166635... 28 6.1
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891... 28 8.1
>02_01_0591 +
4384246-4384434,4384531-4384658,4384741-4384778,
4385248-4385358,4386266-4386345,4386910-4386946,
4387230-4387271,4387555-4387595,4387645-4387746
Length = 255
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Frame = +1
Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLT--GIAGDRMYE 411
+ +++ +++A++HD+AE IVGD+TP GV EEK RRE EA+ + L G + + E
Sbjct: 102 VNRDRCVKMAIVHDIAEAIVGDITPSDGVPKEEKSRREQEALDHMCSLLGGGPRAEEIRE 161
Query: 412 LYKEYEDQSSPEAKFAKDLDRYDMILQAFEYE 507
L+ EYE ++ EAK KD D+ +MILQA EYE
Sbjct: 162 LWMEYEQNATLEAKVVKDFDKVEMILQALEYE 193
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 92 FITQYFSKKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDR 247
F+T + K KR GW+ + E++A HMYRMG+M + + + DR
Sbjct: 55 FLTLCYRLKTTKRAGWVRRGVQGPESVADHMYRMGVMALVAADLPSGVNRDR 106
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 70.9 bits (166), Expect = 9e-13
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +1
Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLT--GIAGDRMYE 411
+ + + ++IA++HD+AE IVGD+TP G+ EK RRE +A+ + + G D + E
Sbjct: 132 VDRERCIKIAIVHDIAEAIVGDITPSDGIPKAEKSRREQKALNEMCEVLGGGPIADEIKE 191
Query: 412 LYKEYEDQSSPEAKFAKDLDR 474
L++EYE+ SS EA KD D+
Sbjct: 192 LWEEYENNSSIEANLVKDFDK 212
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 92 FITQYFSKKHVKRTGWILCDINDCETIAGHMYRMGIMTFL 211
F+T K KR GWI I E+IA HMYRM +M +
Sbjct: 86 FLTLCHRLKTTKRKGWINHSIKGPESIADHMYRMALMALI 125
>01_06_0555 -
30182818-30183169,30183268-30183674,30183804-30184773,
30184829-30184902,30184941-30185084,30185186-30185365,
30185448-30185988,30186081-30186538,30187723-30187901,
30187998-30188052,30188217-30188468
Length = 1203
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/71 (19%), Positives = 35/71 (49%)
Frame = -2
Query: 300 SNNALSQVVNESYLKNFILSNLVGLFSSVSKNVMIPILYMWPAIVSQSLISQRIQPVLLT 121
S + S++ NE+ L ++++ + L + ++I + +L+ +QP +
Sbjct: 739 SGSLCSRLSNEASLVKTLVADRISLLLQTASGIIIAVTMGLIVAWKLALVMIAVQPTTMI 798
Query: 120 CFFEKYCVINN 88
C++ K V++N
Sbjct: 799 CYYAKKIVLSN 809
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -2
Query: 330 RTHSTVRCEVSNNALSQVVNESYLKNFILSNLVGLFSSVSKNVMIPILYMWPAIVSQSLI 151
R + V C + N++Y N++LSNL +++ +M+P Y+WP + S + I
Sbjct: 243 REVNLVFCFLDKALSDPSTNKTY--NYMLSNLT-FIKTIASGIMVPKNYIWP-VTSDNYI 298
Query: 150 SQRIQPV 130
Q V
Sbjct: 299 QLHTQIV 305
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 120 CFFEKYCVINNNLIRDSLHY----KQLLDLTCPRH*TASNSLV 4
C F+ + ++ L+RD L++ K L DL PR +AS +LV
Sbjct: 39 CTFDDWLQLSELLVRDPLYHVKLSKMLRDLAAPRFLSASQNLV 81
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 325 SPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAK 453
SP ++ E+E + G +G DR+Y + K ++ ++P A+
Sbjct: 304 SPAARNGSEEEGSDSDGGRSGSGSDRVYTIDKVHQGATAPAAR 346
>08_02_0351 -
16138147-16138187,16138328-16138480,16138684-16138778,
16139683-16139764,16142564-16142639,16143448-16143563,
16144260-16144349,16144438-16144453
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 634 VCFSKISLCKYSSLTKSCINGWSN--FPSVAVKNS*HFFGVFSRFRTQMLVGSYHNGPS 464
V F +I L + C+NG + SV + F+G + +Q SYHNG S
Sbjct: 103 VLFVRIILGGMQNAQDVCLNGTATRIHNSVPPQQGTTFYGSYGGNNSQSTASSYHNGSS 161
>07_01_0366 +
2723069-2723116,2723239-2723488,2723563-2723715,
2723800-2723905,2723988-2724102,2724756-2724791
Length = 235
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 333 FRTHSTVRCEVSNNALSQVVNESY 262
F+TH T C + L+Q+V ++Y
Sbjct: 31 FKTHQTAGCPIKREELTQIVTKNY 54
>03_04_0032 -
16663018-16663026,16663072-16663235,16663384-16663517,
16664300-16664393,16667458-16667566,16668441-16668489,
16668622-16668647
Length = 194
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 427 RILCIIHTFYHQQFQLVLKLSSWPHLLFC 341
R+ + YH FQ++LKL HL C
Sbjct: 155 RLFRVYSHMYHSHFQMILKLKEEAHLSTC 183
>04_03_0685 +
18687520-18687787,18688637-18688725,18689102-18689195,
18689237-18689304,18690300-18690383,18690458-18690745,
18691474-18691626
Length = 347
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -2
Query: 324 HSTVRCEVSNNALSQVVNESYLKNFILSNLVGLFSSVSKNVMIPIL 187
HS C + + L+ ++ ++ + +GLF S S+ V+ P+L
Sbjct: 163 HSKQHCYIFSKFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVL 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,469
Number of Sequences: 37544
Number of extensions: 332013
Number of successful extensions: 760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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