Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120615.seq
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16905| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 4e-26
SB_16876| Best HMM Match : Hydrolase (HMM E-Value=1.8e-06) 35 0.072
SB_31348| Best HMM Match : ERM (HMM E-Value=0) 31 0.89
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08) 31 1.2
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 2.7
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18) 28 6.2
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 28 6.2
>SB_16905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 115 bits (276), Expect = 4e-26
Identities = 54/91 (59%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Frame = +1
Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLTG-IAGDRMYEL 414
+ ++ ++IAL+HD+AECIVGDL P GVS EEKH+RE AM+ ++ L G AG +YEL
Sbjct: 59 LNKDHCIKIALVHDIAECIVGDLAPSDGVSKEEKHKREKAAMEELAILAGEEAGKEIYEL 118
Query: 415 YKEYEDQSSPEAKFAKDLDRYDMILQAFEYE 507
++EYE Q SPEAKF KD+DR++MILQA EYE
Sbjct: 119 WEEYEFQKSPEAKFVKDVDRFEMILQAHEYE 149
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 86 LLFITQYFSKKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRI 250
L F++ K KRTGW+ + E+++ HMYRM ++ FLL + D +
Sbjct: 5 LKFLSLVGQLKRTKRTGWVDHGVKAPESVSDHMYRMAVICFLLPSNSTAATGDTL 59
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 513 ENTPKKCQEFFTATEGKFDHPFIQDLVKEL 602
E+ + Q+FF +T+GKF HP ++D V L
Sbjct: 152 EHKTEWLQDFFDSTKGKFGHPVVKDWVASL 181
>SB_16876| Best HMM Match : Hydrolase (HMM E-Value=1.8e-06)
Length = 595
Score = 34.7 bits (76), Expect = 0.072
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 286 ECIVGDLTPHCGVSPEEKHRREDEAMKTISGLTGIAGDRMYELYKEYEDQSSPEAKFAKD 465
E + D P C V+ + + + GL G Y+LY + + PEA+F KD
Sbjct: 193 EGLWSDQQPSCAVANMTPFMPPNPDINPLLGLKAKPGVFQYQLY--FHQEGPPEAEFEKD 250
Query: 466 LDR-YDMILQ-AFEYENVKI 519
L R + + L+ A E E +K+
Sbjct: 251 LRRTFKLFLRNASEMEQIKV 270
>SB_31348| Best HMM Match : ERM (HMM E-Value=0)
Length = 665
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/75 (21%), Positives = 40/75 (53%)
Frame = +1
Query: 406 YELYKEYEDQSSPEAKFAKDLDRYDMILQAFEYENVKILQRNVKSSLLQQRENLTTRLYK 585
+EL+K + E + K L + + + + E N ++++ + ++Q+E L RL +
Sbjct: 117 HELFKRRRKPDTMEIQQMKALAKEEKMRRQIE-RNKLLVEQQAREEAIRQKEELQARLQE 175
Query: 586 I*SKNCTCKEKSLRN 630
+ ++ +C+E +R+
Sbjct: 176 LQNEADSCREALMRS 190
>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
Length = 1167
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 572 VVKFSLCCSKELLTFLWSIFTFSYSN 495
+ FS+ CS++L FLW I F+ SN
Sbjct: 396 IFSFSVICSRKLPCFLWKIILFTDSN 421
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +1
Query: 313 HCGVSPEEKHRREDEAMKTISGLTGIAGDRMYE-LYKEYEDQSSPEAKFAKDLDRYDMIL 489
H + +K+ RE K I ++ + + + L + ++D +AK Y+ L
Sbjct: 41 HAHMEKSDKNMREAHR-KQIQEISSKHKEELQQQLERFHQDLKKKDAKLKTTSQEYEDRL 99
Query: 490 QAFEYENVKILQRNVKSSLLQQRENLTTRLYKI*SKNCTCKEKSLRNIPLS 642
+ + ++ NV+ L +RENLT R+ + +C E++LR + L+
Sbjct: 100 YKTQEKLAEL--SNVRQQLENERENLTIRMQNMMQTHC---EEALRVLGLT 145
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +1
Query: 358 AMKTISGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRYDMILQAFEYENVKILQRNVK 537
A+K++ G G + L E S + K ++ L+RYD + + E +KI
Sbjct: 4656 ALKSLIGNLEDTGHDLTALSGPGEASDSVDGKVSECLERYDRLCKLTEERGIKI------ 4709
Query: 538 SSLLQQRENLTTRLYKI 588
+QQ EN+ RL ++
Sbjct: 4710 GITVQQEENIMVRLEEL 4726
>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 400 YHQQFQLVLKLSSWPHLLFCVFLQDSLHSE 311
YH QF+L KL+ W V+L SL +
Sbjct: 131 YHAQFELTAKLNRWSDSQKAVYLATSLRGQ 160
>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
Length = 1191
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 298 GDLTPHCGVSPEEKHRREDEAMK-TISGLTGIAGDR 402
G L+ V E HR+E+EA +SGL G +G R
Sbjct: 244 GSLSVEYSVKSEPLHRKEEEADNGFVSGLIGTSGQR 279
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 566 KFSLCCSKELLTFLWSIFTFS 504
KF L CS++ LWS+FTF+
Sbjct: 96 KFLLSCSEDKTIRLWSLFTFT 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,841,743
Number of Sequences: 59808
Number of extensions: 422246
Number of successful extensions: 1167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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