Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120615.seq
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.30 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.39 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   6.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.4  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 119 HVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRIKFFK*LSFTTWLSALL 298
           +V +   I+C +N C ++   +    ++ F+  E+  P   D       L+F  + SA+L
Sbjct: 363 NVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPV-ADVAASGPGLAFLVYPSAVL 421

Query: 299 E 301
           E
Sbjct: 422 E 422


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 119 HVKRTGWILCDINDCETIAGHMYRMGIMTFLLTEENNPTKLDRIKFFK*LSFTTWLSALL 298
           +V +   I+C +N C ++   +    ++ F+  E+  P   D       L+F  + SA+L
Sbjct: 310 NVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPV-ADVAVSGPGLAFLVYPSAVL 368

Query: 299 E 301
           E
Sbjct: 369 E 369


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 373 SGLTGIAGDRMYELYKEYEDQSSPEAKFAKDLDRYDMILQA 495
           +G  G  G R Y     YED +    +FA+++D   + ++A
Sbjct: 597 AGGAGGGGARSYVDPHTYEDPNQAVREFAREIDAGYITIEA 637


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 641 DNGMFLKDFSLQVQFFD 591
           D G+F K++ L V F D
Sbjct: 366 DRGVFYKNYLLNVSFID 382


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 641 DNGMFLKDFSLQVQFFD 591
           D G+F K++ L V F D
Sbjct: 456 DRGVFYKNYLLNVSFID 472


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 185 YRMGIMTFLLTEE 223
           YR+GI+ FL TE+
Sbjct: 158 YRLGILGFLSTED 170


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 185 YRMGIMTFLLTEE 223
           YR+GI+ FL TE+
Sbjct: 29  YRLGILGFLSTED 41


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 185 YRMGIMTFLLTEE 223
           YR+GI+ FL TE+
Sbjct: 158 YRLGILGFLSTED 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,412
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)