Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120615.seq
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23820.2 68415.m02846 metal-dependent phosphohydrolase HD dom...   105   4e-23
At2g23820.1 68415.m02845 metal-dependent phosphohydrolase HD dom...   105   4e-23
At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD dom...    87   8e-18
At4g01320.1 68417.m00172 CAAX protease, putative (STE24) contain...    28   5.1  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    28   6.8  
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    28   6.8  
At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2...    28   6.8  
At3g02710.1 68416.m00262 nuclear associated protein-related / NA...    27   8.9  

>At2g23820.2 68415.m02846 metal-dependent phosphohydrolase HD
           domain-containing protein contains Pfam profile PF01966:
           HD domain
          Length = 257

 Score =  105 bits (251), Expect = 4e-23
 Identities = 48/93 (51%), Positives = 71/93 (76%), Gaps = 3/93 (3%)
 Frame = +1

Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLTGIAGDR---MY 408
           + ++K +++A++HD+AE IVGD+TP CG+S EEK+RRE EA++ +  L G  G+R   + 
Sbjct: 128 VNRDKCMKMAIVHDIAEAIVGDITPSCGISKEEKNRRESEALEHMCKLLG-GGERAKEIA 186

Query: 409 ELYKEYEDQSSPEAKFAKDLDRYDMILQAFEYE 507
           EL++EYE+ SSPEAK  KD D+ ++ILQA EYE
Sbjct: 187 ELWREYEENSSPEAKVVKDFDKVELILQALEYE 219



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%)
 Frame = +2

Query: 41  VKSSSCL*CSESRIKLLFITQYFSKKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTE 220
           V SSS    + S I  L +      K   R GWI  D+ D E+IA HMYRMG+M  + ++
Sbjct: 67  VPSSSSSSSASSAIDFLSLCTRL--KTTPRAGWIKRDVKDPESIADHMYRMGLMALISSD 124


>At2g23820.1 68415.m02845 metal-dependent phosphohydrolase HD
           domain-containing protein contains Pfam profile PF01966:
           HD domain
          Length = 245

 Score =  105 bits (251), Expect = 4e-23
 Identities = 48/93 (51%), Positives = 71/93 (76%), Gaps = 3/93 (3%)
 Frame = +1

Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLTGIAGDR---MY 408
           + ++K +++A++HD+AE IVGD+TP CG+S EEK+RRE EA++ +  L G  G+R   + 
Sbjct: 128 VNRDKCMKMAIVHDIAEAIVGDITPSCGISKEEKNRRESEALEHMCKLLG-GGERAKEIA 186

Query: 409 ELYKEYEDQSSPEAKFAKDLDRYDMILQAFEYE 507
           EL++EYE+ SSPEAK  KD D+ ++ILQA EYE
Sbjct: 187 ELWREYEENSSPEAKVVKDFDKVELILQALEYE 219



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%)
 Frame = +2

Query: 41  VKSSSCL*CSESRIKLLFITQYFSKKHVKRTGWILCDINDCETIAGHMYRMGIMTFLLTE 220
           V SSS    + S I  L +      K   R GWI  D+ D E+IA HMYRMG+M  + ++
Sbjct: 67  VPSSSSSSSASSAIDFLSLCTRL--KTTPRAGWIKRDVKDPESIADHMYRMGLMALISSD 124


>At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD
           domain-containing protein contains Pfam profile PF01966:
           HD domain
          Length = 258

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 41/92 (44%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
 Frame = +1

Query: 238 IGQNKILQIALIHDLAECIVGDLTPHCGVSPEEKHRREDEAMKTISGLT--GIAGDRMYE 411
           + + + +++A++HD+AE IVGD+TP  GV  EEK RRE  A+K +  +   G+  + + E
Sbjct: 124 VDRERCIKMAIVHDIAEAIVGDITPSDGVPKEEKSRRETAALKEMCEVLGGGLRAEEITE 183

Query: 412 LYKEYEDQSSPEAKFAKDLDRYDMILQAFEYE 507
           L+ EYE+ +S EA   KD D+ +MILQA EYE
Sbjct: 184 LWLEYENNASLEANIVKDFDKVEMILQALEYE 215



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/40 (47%), Positives = 23/40 (57%)
 Frame = +2

Query: 92  FITQYFSKKHVKRTGWILCDINDCETIAGHMYRMGIMTFL 211
           F+T     K  KR GWI   IN  E+IA HMYRM +M  +
Sbjct: 78  FLTLCHRLKTTKRKGWINQGINGPESIADHMYRMALMALI 117


>At4g01320.1 68417.m00172 CAAX protease, putative (STE24) contains
           Pfam domain, PF01435: Peptidase family M48
          Length = 424

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 189 LYMWPAIVSQSLISQRIQPVLLTCFFEKYCVINNNLIRDSL 67
           +Y+W  +   SL+   I PVL+   F K+  + +  +R+ +
Sbjct: 183 IYLWAFMFILSLVMMTIYPVLIAPLFNKFTPLPDGDLREKI 223


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 448 PQVNFGLRILCIIHTFYHQQFQLVLKLSSWPHLLFCV 338
           P++N GL+I+ +I     Q   L +K S  P ++  V
Sbjct: 175 PEINLGLKIISLITQLISQPISLSIKTSLIPQIISMV 211


>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 306 EVSNNALSQVVNESYLKNFILSNLVGL 226
           E S       V+ESYL  F+++N+VGL
Sbjct: 24  EPSQQQSQDCVSESYLIGFVIANIVGL 50


>At2g24710.1 68415.m02952 glutamate receptor family protein (GLR2.3)
           plant glutamate receptor family, PMID:11379626
          Length = 895

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 209 LLTEENNPTKLDRIKFFK*LSFTTWLSALL 298
           L+ E  +P K D I F K LS+  WL++ +
Sbjct: 560 LIVEMTDPVKRDYILFMKPLSWKLWLTSFI 589


>At3g02710.1 68416.m00262 nuclear associated protein-related /
           NAP-related similar to Nuclear associated protein (NAP)
           (NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
          Length = 529

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 397 DRMYELYKEYEDQSSPEAKFAKDLDRYDMILQAFEYENVKI 519
           DR+ ELY  Y D+   EA+    L+  D+ L   E  N K+
Sbjct: 412 DRLMELYLRYSDRVRSEAERLDQLELDDLELDEDEKYNRKL 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,800
Number of Sequences: 28952
Number of extensions: 292269
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)