Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120613.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    46   4e-06
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    28   1.1  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    27   3.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   4.5  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   5.9  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/72 (27%), Positives = 40/72 (55%)
 Frame = +2

Query: 23  VDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEPSKS 202
           V++   ++  + P   + +FG+ E I+GY DL++ + Y    +   L I Y++++ P   
Sbjct: 20  VNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITYECPLMVPKLEISYSERLAP--D 77

Query: 203 EGMKADDVEGAL 238
            G++  D+EG L
Sbjct: 78  SGVEPTDIEGTL 89


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 161 LGIDYTDKIEPSKSE-GMKADDVEGALTKVIAQGISLIWITLCHN*RKMSHSHHM 322
           LG+ Y D I   + +  +  ++V  A T++I  G +  W T   +  ++ H+HH+
Sbjct: 126 LGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHI 180


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 295 KKDESFTPHGK--MLHAFNVTPFDGESRSFEVYYCETSTQGF 414
           K + SFTP G       +NV  F+G   +  +Y  + S +GF
Sbjct: 161 KLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGF 202


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 557 SCLC--NCIQILCLSKPSTSTNLTS-SHITAFRK 649
           +C C  NC  + CL+ P+ +T L + +HI+A  K
Sbjct: 327 ACQCGDNCECLGCLTHPNNATTLAALNHISALEK 360


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 343 NVTPFDGESRSFEVYYCETSTQGFLEYHQR 432
           N   F  ES   EVYYCE     F + +QR
Sbjct: 81  NCVGFADESEVPEVYYCEICHPEFHKVYQR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,431
Number of Sequences: 5004
Number of extensions: 59230
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)