Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120613.seq
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    36   0.041
06_01_0689 + 5028932-5031013                                           29   2.7  
01_03_0126 + 12741397-12743022                                         29   4.7  
02_04_0419 - 22745804-22746106                                         28   6.2  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    28   8.1  
04_04_0765 - 27910189-27912393,27912521-27912598                       28   8.1  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 5   FKLVRSVDDLEN-EETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDYTD 181
           F   R+ D+  +   TS  P   +  FGE+  I+GY +L I ++ SA S   Y  I + +
Sbjct: 59  FDTARNPDEAGSANSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISFEE 118

Query: 182 KIEPSK 199
             +  K
Sbjct: 119 TSDGGK 124


>06_01_0689 + 5028932-5031013
          Length = 693

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 128 LYYSAGSLQTYLGIDYTDKIEPSKSEGMKADDVEGALTKVIAQGISLIWITLCHN 292
           +++S       L  D+  K+   K   +  +++ GA+   IAQ  SL+ + L HN
Sbjct: 130 MFFSDNQFTGVLPDDFFSKLSHLKKLWLDHNELSGAIPASIAQATSLLELHLAHN 184


>01_03_0126 + 12741397-12743022
          Length = 541

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 255 CAITLVRAPSTSSAFIPSDLLGSILSV*SIPRYV*RLPAL*YNLMCRSVYPNIFSFSPNT 76
           C   LV  P++S  F   +L G  L       ++ R   L  +L+  SV   + +FSPN 
Sbjct: 120 CGPALVSLPASS--FFAGNLAGGFLLATLADTHLGRRKMLLLSLVTMSVAAALTAFSPNV 177

Query: 75  W 73
           W
Sbjct: 178 W 178


>02_04_0419 - 22745804-22746106
          Length = 100

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 688 SAENL*HWCTNSEF-SEGGNVRTXEIRGR*WFG 593
           S  NL  W T++   + GG VR   ++G+ WFG
Sbjct: 44  SCSNLGAWLTDAYIPAVGGEVRRGALKGKGWFG 76


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 614 SWTLMVWIGIVSVYS 570
           SW LMVWIG V+V S
Sbjct: 297 SWALMVWIGAVAVTS 311


>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 539 QCSIRYSCLCNCIQILCLSKPSTS 610
           QC +RY  L +   ++CLS PS S
Sbjct: 58  QCLLRYRVLLHVRSVVCLSAPSAS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,105,751
Number of Sequences: 37544
Number of extensions: 331331
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)