Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120613.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    68   6e-12
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                31   1.2  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +2

Query: 14  VRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEP 193
           V S  D+ ++   F P   HQ FG++E IFGY  L ++LYY AG+L TYLG+ Y   I  
Sbjct: 38  VTSEKDVFDKGRQFHPAFSHQFFGDSETIFGYCGLEVQLYYHAGTLLTYLGLTYESNING 97

Query: 194 SKSEGMKADDV 226
             ++G++AD V
Sbjct: 98  KVADGIEADPV 108



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +1

Query: 256 GYITNLDHFVSQLKKDESFTPHGKMLHAF 342
           G++TN D F+++L +  SF P G+++H++
Sbjct: 119 GFLTNKDEFIAKLPEQSSFVPMGELIHSY 147


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +2

Query: 152  QTYLGIDYTDKIEPSKSEGMKADDVEGALTKVI 250
            QTY G++  +  E SKS+G+KAD+V G+   V+
Sbjct: 1587 QTYSGLN--NPAEYSKSQGLKADEVTGSFGPVV 1617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,263
Number of Sequences: 59808
Number of extensions: 417692
Number of successful extensions: 901
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)