Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120613.seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    55   6e-08
AC024791-7|AAU20833.1|  278|Caenorhabditis elegans Hypothetical ...    30   1.4  
U41105-10|AAA82404.1|  238|Caenorhabditis elegans Hypothetical p...    29   4.2  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    29   4.2  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    28   7.3  
AL132860-22|CAB60520.1|  282|Caenorhabditis elegans Hypothetical...    28   7.3  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    28   7.3  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    28   7.3  

>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 22/58 (37%), Positives = 39/58 (67%)
 Frame = +2

Query: 53  FGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEPSKSEGMKADDV 226
           + P+M +Q FG+ E IFGY DL + ++++A +L +Y+ + Y+ K +     G++ADDV
Sbjct: 170 YEPEMVYQHFGDEETIFGYEDLEVTIHHTAQTLYSYINVSYSSKAK--NENGLEADDV 225



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/82 (26%), Positives = 44/82 (53%)
 Frame = +1

Query: 262 ITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSFEVYYCETSTQGFLEYHQRLQT 441
           ++  + F  +L K + F P G+M+H F +     + +S+EVY     T+ F  + +R+QT
Sbjct: 240 VSGKEEFQQKLIKQKDFKPFGEMVHKFEL-----KGKSYEVYKVAEQTEEFNLFLERIQT 294

Query: 442 FLLWYVDAASFIDVDDDQWTFF 507
             +++++  S  D  +D W  +
Sbjct: 295 LGMFFIECCSLTDNTEDNWLHY 316


>AC024791-7|AAU20833.1|  278|Caenorhabditis elegans Hypothetical
           protein Y47G6A.15 protein.
          Length = 278

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 152 QTYLGIDYTDKIEPSKSEGMKADDVEGALTKVIAQGISL 268
           QTY G  Y   +E  K E  KAD++E    ++ A+ +SL
Sbjct: 53  QTYTGAQYNRLVEKFKKEVDKADELEAEKRQLEAEMVSL 91


>U41105-10|AAA82404.1|  238|Caenorhabditis elegans Hypothetical
           protein T02G5.3 protein.
          Length = 238

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 75  RYLERMRIYLDIQIYTLNYITVQEVF 152
           +Y  R+R+YL   ++ LN+  + ++F
Sbjct: 192 KYQNRLRLYLGFCVFALNFFVIDQIF 217


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 421 ILENLELKSHNNILQMICSLHQKGLH*MHAAF 326
           ++ENLE   H + +++    HQK  H  HA F
Sbjct: 338 LVENLETICHRDNIRLFTDFHQKRKHPSHADF 369


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 273 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 365
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AL132860-22|CAB60520.1|  282|Caenorhabditis elegans Hypothetical
           protein Y56A3A.29a protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 247 YSTGYITNLDHFV-SQLKKDES-FTPHGKMLHAFNVTPFD 360
           +  GYI+ ++ F+ S++ K +  F P  ++   FN+ PFD
Sbjct: 74  FKKGYISKIEKFLNSEVNKGKQVFPPPTQIFTTFNLLPFD 113


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 273 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 365
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 273 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 365
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 109 ISKYILILSKYLVTHVGTKACLFI-FEIIYRPH*FEF 2
           IS Y LIL    +TH+G   C++I   I++  + F F
Sbjct: 103 ISMYPLILMFLPITHIGVPVCIYIALHIVFALYYFLF 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,623,661
Number of Sequences: 27780
Number of extensions: 327409
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)