Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120613.seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80340.1 68414.m09405 gibberellin 3-beta-dioxygenase / gibber...    31   0.96 
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    30   1.7  
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden...    29   2.2  
At5g38880.1 68418.m04702 expressed protein                             27   9.0  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    27   9.0  

>At1g80340.1 68414.m09405 gibberellin 3-beta-dioxygenase /
           gibberellin 3 beta-hydroxylase (GA4H) nearly identical
           to gibberellin 3 beta-hydroxylase GI:3982753 GB:AAC83647
           [Arabidopsis thaliana]
          Length = 347

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 253 TGY-ITNLDHFVSQLKKDESFTPHGKMLHAFN-VTPFDGESRSFEVYYCETSTQGFLEYH 426
           +GY +  +  F ++    E FT  G  LH F  + P      S  + YCE   + + E+ 
Sbjct: 115 SGYGVARIASFFNKKMWSEGFTVIGSPLHDFRKLWP------SHHLKYCEIIEE-YEEHM 167

Query: 427 QRLQTFLLWYVDAASFIDVDDDQW 498
           Q+L   L+W+   +  ++  D QW
Sbjct: 168 QKLAAKLMWFALGSLGVEEKDIQW 191


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 247 YSTGYITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSF 378
           +++ YI NLD  VS+      F+  GK++ +     F GESR F
Sbjct: 16  FTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGF 59


>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
           identical to AKT1 [Arabidopsis thaliana]
           gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 857

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 433 LQTFLLWYVDAASFIDVDDDQWTFFKFLRN 522
           + TF + Y+D ++++ VDD +   FK+LR+
Sbjct: 105 IMTFFVGYLDKSTYLIVDDRKQIAFKYLRS 134


>At5g38880.1 68418.m04702 expressed protein 
          Length = 796

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 391 CETSTQGFLEYHQRLQTFLLWYVDAASFIDVDDD 492
           C+ +T+ F EYH+RLQ ++    DA   ++  ++
Sbjct: 186 CDEATRIFAEYHKRLQVYVNQANDAQRSVNSSNE 219


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +1

Query: 367 SRSFEVYYCETSTQGFLEY-----HQRLQTFLLWYVDAASFIDVDDDQW 498
           S SFEV+ CE ST+ F +      H ++ T L W  D         D +
Sbjct: 411 SGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNY 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,106
Number of Sequences: 28952
Number of extensions: 292615
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)