Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120611.seq
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   3.0  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    26   5.3  

>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 298 YSLCA*AC*WLP*TRLVFRFGSSSPNYTRLSACNFWGASLLSIFFRVA*KKSCNCLLSKR 119
           Y + A  C WL    L+F    +S + +++ A +  G    S+F     KK+ N L +K 
Sbjct: 49  YEVFAPVCMWLDAIDLLFERLKASVDVSKIQAISGAGQQHASVFLLKGSKKALNSLDAKS 108

Query: 118 FL 113
            L
Sbjct: 109 SL 110


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 260 NQACISLRVKQSELHPPKCVQFLGGIVVVYL--F*SGVEKVLQ 138
           N       +  S L  PKC   +G  VVVYL  F S +EK+ Q
Sbjct: 59  NGVTYDFHILPSGLVNPKCQNLIGSGVVVYLPAFFSELEKLEQ 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,394
Number of Sequences: 5004
Number of extensions: 51582
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)