Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120611.seq
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0557 + 4103721-4104616,4105428-4105626                           31   0.78 
04_04_0261 + 24007790-24009098,24009191-24011118                       29   4.1  
01_01_0488 - 3597652-3598761,3599619-3600860                           29   4.1  
02_02_0617 - 12184745-12185008,12185352-12185451,12186585-121866...    27   9.6  
01_01_0220 + 1866989-1868393,1868465-1869153                           27   9.6  

>02_01_0557 + 4103721-4104616,4105428-4105626
          Length = 364

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -1

Query: 242 LRVKQSELHPPKCVQFLGGIVVVYLF*SGVEKVLQLPIIETLLGXAHKTKKFNVIAVIV 66
           LR++      PK ++FLG +V+ YL  + +   L + +   L+  AHK  K   I +IV
Sbjct: 82  LRMENGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGIIV 140


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +1

Query: 415 VCLHHKRIARLLGIKKIYHQDTSGSFQRFTKTNMVTCRSNNLLQXLRACAKWKVVGLTGI 594
           +CL   R+  +   + IY+  +S S  +     +  C    +   LR+      + L+  
Sbjct: 551 LCLSANRLTVIADDEHIYNSSSSASLLQLNSLGLACCNMTKIPAILRSVVV-NDLDLSCN 609

Query: 595 ELXXPIPTW 621
           +L  PIP W
Sbjct: 610 QLDGPIPDW 618


>01_01_0488 - 3597652-3598761,3599619-3600860
          Length = 783

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 225 GLLDPKRNTSLVQGSHQHAQA 287
           GL+DP+R   L +G H H QA
Sbjct: 382 GLVDPRRARELYEGLHSHLQA 402


>02_02_0617 -
           12184745-12185008,12185352-12185451,12186585-12186653,
           12187988-12188037
          Length = 160

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 193 KNCTHLGGCNSDCLTRSEIQAWFREAINTLKHTMNTEDVCAHMLDI 330
           ++C HL G + + L   E+Q   ++  NT KH  + +D   HML +
Sbjct: 38  RHC-HLMGEDLESLNLKELQQLEKQLKNTSKHIRSRKDEEKHMLAV 82


>01_01_0220 + 1866989-1868393,1868465-1869153
          Length = 697

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 3   HCPIVPLNKYFNYMNDKQLITYDY 74
           H  IVPLN Y+ Y  D++L+ Y++
Sbjct: 435 HPNIVPLNAYY-YARDEKLLVYEF 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,991,273
Number of Sequences: 37544
Number of extensions: 331516
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)