Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120611.seq
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          34   0.11 
SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)                 27   9.8  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -1

Query: 209 KCVQFLGGIVVVYLF*SGVEKVLQLPIIETLLGXAHKTKKFNVIAVIVRDQLFVVHIIKI 30
           K +  L  I  + LF   +  ++  P+I  L+G +HKT K   +A IV D  F+  ++  
Sbjct: 633 KSIDTLKNIEALELFAEMLTPIITCPVI--LIGLSHKTVKVVTVARIVSDNAFLASLLAY 690

Query: 29  FVE 21
           F +
Sbjct: 691 FTK 693


>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 341 SNDTMSNMCAQTSSVFIVCL----SVLMASLNQACISLRVKQSELHPPKCVQFLGGIVVV 174
           S  T SN+  Q  + F+ CL    + L A ++  C+ ++     + PP    +L G+ ++
Sbjct: 272 STGTYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLL 331

Query: 173 YLF 165
           +LF
Sbjct: 332 HLF 334


>SB_35671| Best HMM Match : zf-C3HC4 (HMM E-Value=0.01)
          Length = 527

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 295 NTEDVCAHMLDIVSFERIKEYIRANLGHFTVITDKCSKR--KVCLHHKRIARLLGIKKIY 468
           N  D    +  I SFE I  +I   L H + IT K  K+   +   H  I ++L + K  
Sbjct: 22  NRSDAQQILRSITSFEFIVVFIITYLSHLSGITVKLQKKTSDIIEAHYMIEQVLALYKSE 81

Query: 469 HQDTSGSF 492
             D    F
Sbjct: 82  RDDIDAGF 89


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 346  IKEYIRANLGHFTVITDKCSKRKVCLHHK 432
            I +Y+R  + H   +T  C++  VC +HK
Sbjct: 1186 ISDYLRDFIPHAVHVTPGCARTDVCKNHK 1214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,345
Number of Sequences: 59808
Number of extensions: 407044
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)