Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120611.seq
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    28   6.5  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      27   8.6  

>Z95123-1|CAD59158.1|   83|Caenorhabditis elegans Hypothetical
           protein VZK822L.2 protein.
          Length = 83

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 278 VLMASLNQACISLRVKQSELHPPKCVQFLGGIVVVYL 168
           +L+  ++  CI + + QS L PP+C     G +++ L
Sbjct: 13  LLVGGMSIVCILIHIIQSTLRPPQCCHNSSGTLIIGL 49


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 231 LDPKRNTSLVQGSHQHAQAHNEYRRRLRAH 320
           +D +RNT + Q SH H    ++  R L+ H
Sbjct: 655 IDEQRNTQIAQMSHHHTPRPSKAARSLKFH 684


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 25/127 (19%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
 Frame = -1

Query: 368 LALIYSFIRSNDTMSNM------CAQTSSVFIVCLSVLMASLNQACISLRVKQSELHPPK 207
           L +IY F++ N+++ ++          +S+F + +  +   ++ +   L V    L   K
Sbjct: 40  LPVIYIFLKMNNSIFDLPVIYIFLKMNNSIFDLPVIYIFLKMSNSIFKLPVIYIFL---K 96

Query: 206 CVQFLGGIVVVYLF*SGVEKVLQLPIIETLLGXAHKTKKFNVIAVIVR--DQLFVVHIIK 33
               +  + V+Y+F      +  LP+I   L  ++   K  VI + ++  + +F + +I 
Sbjct: 97  MSNSIFDLPVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPVIYIFLKMSNSIFDLPVIY 156

Query: 32  IFVERHD 12
           IF++ ++
Sbjct: 157 IFLKMNN 163


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +3

Query: 435 NCQAVGH*KNISSRYXRVVSKVYKNQHGNMPEQQSST--EXAGVCKMESCWXNWDRALXT 608
           +C+  G  K   S   +    V K     + +Q SS   +    C  E CW NWD     
Sbjct: 757 DCEEFGEWKEWGSCSEKCALGVQKRFRPCLTDQCSSKHLQEERPCDNEGCWTNWDEWSSC 816

Query: 609 NPNMGPANCY 638
           + + G    Y
Sbjct: 817 SQSCGGGRRY 826


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +3

Query: 435 NCQAVGH*KNISSRYXRVVSKVYKNQHGNMPEQQSST--EXAGVCKMESCWXNWDRALXT 608
           +C+  G  K   S   +    V K     + +Q SS   +    C  E CW NWD     
Sbjct: 757 DCEEFGEWKEWGSCSEKCALGVQKRFRPCLTDQCSSKHLQEERPCDNEGCWTNWDEWSSC 816

Query: 609 NPNMGPANCY 638
           + + G    Y
Sbjct: 817 SQSCGGGRRY 826


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +3

Query: 435 NCQAVGH*KNISSRYXRVVSKVYKNQHGNMPEQQSST--EXAGVCKMESCWXNWDRALXT 608
           +C+  G  K   S   +    V K     + +Q SS   +    C  E CW NWD     
Sbjct: 757 DCEEFGEWKEWGSCSEKCALGVQKRFRPCLTDQCSSKHLQEERPCDNEGCWTNWDEWSSC 816

Query: 609 NPNMGPANCY 638
           + + G    Y
Sbjct: 817 SQSCGGGRRY 826


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,987
Number of Sequences: 27780
Number of extensions: 306907
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)