Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120611.seq
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14570.2 68414.m01733 UBX domain-containing protein contains ...    29   2.6  
At1g14570.1 68414.m01732 UBX domain-containing protein contains ...    29   2.6  
At5g48385.1 68418.m05980 expressed protein                             28   6.1  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   8.0  
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a...    27   8.0  

>At1g14570.2 68414.m01733 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 280 LKHTMNTEDVCAHML--DIVSFERIKEYIRANLGHFTVITDKCSKRKVCLHHK 432
           L +  +T +  +HML  D  + + + + I+AN   + V  D    RKVC ++K
Sbjct: 202 LVNLQSTTEFSSHMLNRDTWANDAVSQTIKANFIFWQVYDDTTEGRKVCTYYK 254


>At1g14570.1 68414.m01732 UBX domain-containing protein contains
           Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
           interaction motif
          Length = 468

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 280 LKHTMNTEDVCAHML--DIVSFERIKEYIRANLGHFTVITDKCSKRKVCLHHK 432
           L +  +T +  +HML  D  + + + + I+AN   + V  D    RKVC ++K
Sbjct: 202 LVNLQSTTEFSSHMLNRDTWANDAVSQTIKANFIFWQVYDDTTEGRKVCTYYK 254


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -1

Query: 311 QTSSVFIVCLSVLMASLNQACISLRVKQSELHPPKCV 201
           +T  + + CLS+L++ L++ C+++ + Q+  H  K +
Sbjct: 247 RTCIMLMECLSILLSGLDRNCLAVVLSQNVKHRAKTI 283


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 355 YIRANLGHFTVITDKC-----SKRKVCLHHKRIARLLGIKKIYHQDTSGSFQRFTKTN 513
           Y+ A+L  F++ T  C     S R   L   ++   LGIKK Y +  S ++Q  + TN
Sbjct: 82  YLFASLDAFSMFTLPCHDALKSFRGCVLSLIQLGDQLGIKKFYRKAASKAYQALSVTN 139


>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
           anther-specific protein ATA27 contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to
           anther-specific protein ATA27 (GI:2746341)  [Arabidopsis
           thaliana]
          Length = 535

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 258 VQGSHQHAQAHNEYRRRLRAHVGHRV 335
           + G H H   + +Y + ++ H+GHR+
Sbjct: 303 ILGWHLHPTTYGDYPQSMKDHIGHRL 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,654,440
Number of Sequences: 28952
Number of extensions: 269122
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)