Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120609.seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    28   1.5  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   2.6  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   4.5  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.5  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.5  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   7.9  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   7.9  

>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 368 ESLHFNVYSINRNVVDVIKCSVTSVAQWNK 457
           + +H N YS+ R +V+      TSV  W+K
Sbjct: 619 DGVHSNGYSLVRKIVEYSDLEYTSVCPWDK 648


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 368 ESLHFNVYSINRNVVDVIKCSVTSVAQWNKIN 463
           + LH N+YS+ R ++ V+  SV     W  +N
Sbjct: 78  KDLHPNIYSLLRLLIAVLAVSVVFFTAWGCVN 109


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 251 YWLHKIIFNFCNRKTNVALQFDKLHF*AATPPPVRREQHQAQDLP 117
           YW+++   NF  R T V   F + +F  A P  + +   +  D+P
Sbjct: 9   YWVNQFAINFACRNTYVNPMFLR-YFHCAVPRAISQRALKPMDIP 52


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = +2

Query: 290 CKHQLCSMCXXXXXXXXXXTCPLCRV-ESLHFNVYSINRNVVDVIKC----SVTSVAQWN 454
           C H  C  C           CPLCR  E +  +  +I+  +++ +K      +    + N
Sbjct: 375 CSHVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNFMKTYFPREIKEKFEEN 434

Query: 455 KINDNFDAASLASVLFEKVC 514
           + ND F  +S++ V  +  C
Sbjct: 435 E-NDTFTPSSISVVSGQNNC 453


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 278 ELDTCKHQLCSMCXXXXXXXXXXTCPLCRVESL 376
           +L  CKH     C          +CPLCR   +
Sbjct: 781 KLQACKHFFHQACIDQWLTTGNNSCPLCRAHGV 813


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +2

Query: 281 LDTCKHQLCSMCXXXXXXXXXXTCPLC 361
           +  C H  CS C          TCP C
Sbjct: 652 IPNCGHAFCSNCMEPFYEHKTSTCPQC 678


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 347 TCPLCRVESLHFNVYSINRNVVDVIKCSVT 436
           TCPLCR E  H  V S +  ++ +I  S T
Sbjct: 145 TCPLCRKEVPHETVGSAHPPILFIIPHSHT 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,815
Number of Sequences: 5004
Number of extensions: 43208
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)